| Gene: Snw1 | ID: uc007ojf.1_intron_6_0_chr12_88799909_r | SPECIES: mm9 |
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(5) OTHER.mut |
(4) PIWI.ip |
(2) PIWI.mut |
(26) TESTES |
| GGGGACCACCGTCTCCTCCTGCACCTGTAATGCACTCTCCTAGTCGGAAGGTAATCCTGCTATAGTCAAGTCTCACTTGTGATTCTAGTTTTACGAACTAAATGGACCCAGTTAAGACTAAAGTATAGTTCGGTGTGCTTCTGAGAATGAGTCCGTGGGAGCATGCTGGCTTACCCGCAGCAGCTCGAGCTCTGAAGTCAGGGAGTGGACAGATCCTTTTTGAGTTGCACAGTTGCCGTTTTCATCTGAAAGCTGCCATATTGCCCCACTCCTCCCAGTCAGCCATGTCTAAGTATGGAAAAGTACTGTCTAACATTTCTGATAATCTGAACTCTTCTCCTTTCTTCACATTAGTGCTCCTGTGACTACAGTTCACGCCATAGTCCACCCCAGCAGAGATTTTACTGCAATTGTCGTCCTGTGTTGATGCATGTAGAGATGTCCGTGGGGAGGGTCGTATTTGGGCTTCCAGTTAGACTGTAATAAACACGTCTCTTCTCACCTGCTTTCAGATGACTGTAAAGGAACAACAAGAGTGGAAGATCCCGCCTTGTATTTCCAA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | mjTestesWT4() Testes Data. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTAATCCTGCTATAGTCAAGTCTCACTTGTGATTCTAGTTTTACGAACTAAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 52 | 1 | 33.00 | 33.00 | 33.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACTGTAAAGGAACAACAAGAGT......................... | 27 | 1 | 11.00 | 11.00 | - | 1.00 | 2.00 | 2.00 | 3.00 | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACTGTAAAGGAACAACAAGAG.......................... | 26 | 1 | 8.00 | 8.00 | - | - | 3.00 | - | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACTGTAAAGGAACAACAAGAGTG........................ | 28 | 1 | 6.00 | 6.00 | - | 1.00 | 1.00 | - | - | 1.00 | - | 2.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGTAAAGGAACAACAAGAGTGGA...................... | 27 | 1 | 5.00 | 5.00 | - | 2.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAAGGAACAACAAGAGTGGAAGATC................. | 28 | 1 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGTAAAGGAACAACAAGAGTGG....................... | 26 | 1 | 3.00 | 3.00 | - | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................AAATGGACCCAGTTAAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 19 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACTGTAAAGGAACAACAAGAGTGG....................... | 29 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGTAAAGGAACAACAAGAGTGGA...................... | 28 | 1 | 2.00 | 2.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAAGGAACAACAAGAGTGGAAGATCCC............... | 30 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGTAAAGGAACAACAAGAGTGG....................... | 28 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGTAAAGGAACAACAAGAGT......................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................TCTGAAGTCAGGGAGTGGACAG.............................................................................................................................................................................................................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACTGTAAAGGAACAACAAGAGTGtt...................... | 30 | tt | 1.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTAAAGGAACAACAAGAGTGGAAGATCCCa.............. | 33 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGTAAAGGAACAACAAGAGTGGA...................... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................AGTCCGTGGGAGCATGCTGGCT....................................................................................................................................................................................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGTAAAGGAACAACAAGAGTGG....................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................TGTAATGCACTCTCCTAGTCGGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGAACAACAAGAGTGGAAGATCCC............... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAACAACAAGAGTGGAAGATCCCG.............. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACTGTAAAGGAACAACAAGA........................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAGGAACAACAAGAGTGGAAGATCC................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...................TGCACCTGTAATGCACTCTCCTAGTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGACTGTAAAGGAACAACAAGAGTGGA...................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAAGGAACAACAAGAGTGGAAGA................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGTAAAGGAACAACAAGAGTGGAA..................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGTAAAGGAACAACAAGAGTGGAt..................... | 28 | t | 1.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................GTAATGCACTCTCCTAGTCGGAAGatg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | atg | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACTGTAAAGGAACAACAAGAGTGGAAG.................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACTGTAAAGGAACAACAAGAGTG........................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................CACCTGTAATGCACTCTCCTAGTCGGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGATCCCGCCTTGT........ | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGTAAAGGAACAACAAGAGTG........................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................TGCACCTGTAATGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 15 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GGGGACCACCGTCTCCTCCTGCACCTGTAATGCACTCTCCTAGTCGGAAGGTAATCCTGCTATAGTCAAGTCTCACTTGTGATTCTAGTTTTACGAACTAAATGGACCCAGTTAAGACTAAAGTATAGTTCGGTGTGCTTCTGAGAATGAGTCCGTGGGAGCATGCTGGCTTACCCGCAGCAGCTCGAGCTCTGAAGTCAGGGAGTGGACAGATCCTTTTTGAGTTGCACAGTTGCCGTTTTCATCTGAAAGCTGCCATATTGCCCCACTCCTCCCAGTCAGCCATGTCTAAGTATGGAAAAGTACTGTCTAACATTTCTGATAATCTGAACTCTTCTCCTTTCTTCACATTAGTGCTCCTGTGACTACAGTTCACGCCATAGTCCACCCCAGCAGAGATTTTACTGCAATTGTCGTCCTGTGTTGATGCATGTAGAGATGTCCGTGGGGAGGGTCGTATTTGGGCTTCCAGTTAGACTGTAATAAACACGTCTCTTCTCACCTGCTTTCAGATGACTGTAAAGGAACAACAAGAGTGGAAGATCCCGCCTTGTATTTCCAA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | mjTestesWT4() Testes Data. (testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGTGTTGATGCATGTAGAGATGTCC...................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................ATTTCTGATAATCTGActg........................................................................................................................................................................................................................................ | 19 | ctg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................................................................................................................................................................................................AGTGGACAGATCCTTactc........................................................................................................................................................................................................................................................................................................................................................ | 19 | actc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................AGCAGCTCGAGCTCT................................................................................................................................................................................................................................................................................................................................................................................. | 15 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |