| Gene: Prkch | ID: uc007nwn.1_intron_11_0_chr12_74860729_f.3p | SPECIES: mm9 |
|
|
(5) OTHER.mut |
(1) PIWI.ip |
(1) PIWI.mut |
(21) TESTES |
| CGACATTAAGGCATGATTCATACTGCCCAGGATGGAAAATCCAGCTAGGGAAGCAAGCGCAGCCAAAAAACCTCCCAGGAGGTCCTTTGCCAGGGCTGCTGCCTGCTGTCCTGTGAGACGGCTGCATATGAATGAATGAATGAATGAATGAATGAATGAATGACGGTCTTTCTCTCTCTCTCTTTCTTGCACCGTCATAGTTCATGACCAAGAACCCCACCATGCGCTTGGGCAGCCTGACTCAGGGAGG |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR363957(GSM822759) P20-WTSmall RNA Miwi IPread_length: 36. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGAATGgt.............................................................................................. | 30 | gt | 60.00 | 0.00 | 25.00 | 13.00 | 11.00 | 1.00 | - | - | 5.00 | - | - | 1.00 | 2.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - |
| ................................................................................................................................................TGAATGAATGAATGAATGACGGTCT................................................................................. | 25 | 1 | 8.00 | 8.00 | - | - | - | - | 7.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGAATGgtt............................................................................................. | 31 | gtt | 7.00 | 0.00 | 3.00 | 3.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................AATGAATGAATGAATGAATGACGGTC.................................................................................. | 26 | 1 | 4.00 | 4.00 | - | - | - | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGAATGgaa............................................................................................. | 31 | gaa | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................AATGAATGAATGAATGAATGACGGTCaaa............................................................................... | 29 | aaa | 3.00 | 4.00 | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGAATagg.............................................................................................. | 30 | agg | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ............................................................................................................................................TGAATGAATGAATGAATGAATGACGGTC.................................................................................. | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................TGAATGAATGAATGAATGACGGTCTTTC.............................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGAATtgt.............................................................................................. | 30 | tgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................GAATGAATGACGGTCTTTCTCTCTCTC...................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................TGAATGAATGAATGAATGACGGT................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TGAATGAATGAATGAATGAATGACGGT................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GAATGAATGAATGAATGAATGACGGTC.................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGAATGcg.............................................................................................. | 30 | cg | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGAATGgggt............................................................................................ | 32 | gggt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ................................................................................................................................................TGAATGAATGAATGAATGACGGTC.................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................AATGAATGAATGAATGACGGTCTTctc............................................................................. | 27 | ctc | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................AATGAATGAATGACGGTCTTTCTCTCT......................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ........................................................................................................................................................TGAATGAATGACGGTCTTTCTCTCTC........................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGAAggta.............................................................................................. | 30 | ggta | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................AATGAATGAATGAATGAATGACGGTCTT................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................GAATGAATGAATGAATGACGGTCTT................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................TGAGACGGCTGCATATGAATGAATGAA.............................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...................................................................................................................................................ATGAATGAATGAATGACGGTCTTTCTCTC.......................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGAATGttt............................................................................................. | 31 | ttt | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGActgg............................................................................................... | 29 | ctgg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .................................................................................................................................................GAATGAATGAATGAATGACGGTCTTT............................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGAATGgc.............................................................................................. | 30 | gc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................TATGAATGAATGAATGAATGAATGggt................................................................................................. | 27 | ggt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ................................................................................................................................................TGAATGAATGAATGAATGACGG.................................................................................... | 22 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TGAATGAATGAATGAATGAATGACGG.................................................................................... | 26 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................TGAATGAATGAATGAATGAATGACG..................................................................................... | 25 | 5 | 0.20 | 0.20 | - | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CGACATTAAGGCATGATTCATACTGCCCAGGATGGAAAATCCAGCTAGGGAAGCAAGCGCAGCCAAAAAACCTCCCAGGAGGTCCTTTGCCAGGGCTGCTGCCTGCTGTCCTGTGAGACGGCTGCATATGAATGAATGAATGAATGAATGAATGAATGAATGACGGTCTTTCTCTCTCTCTCTTTCTTGCACCGTCATAGTTCATGACCAAGAACCCCACCATGCGCTTGGGCAGCCTGACTCAGGGAGG |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR363957(GSM822759) P20-WTSmall RNA Miwi IPread_length: 36. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................CTGCTGCCTGCTGTttat............................................................................................................................................. | 18 | ttat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |