(1)
OTHER.mut
(5)
PIWI.ip
(3)
PIWI.mut
(1)
TDRD1.ip
(29)
TESTES

Sense strand
GTCTCAGAAATTTGTAAGAAATATGAATTCTTCAGAAGCAAGAGTTACAGGTACAGAATCTGTTTCTCATTCAGAAATTTCATTTTTTTTTCTTGACAGAGATGAAATAAACGGTAATTTTAGTTATCACTTGATGTAAGCAAGGACAAAAATACTGAAGACCTGTAGACATGGGAAGGTACCACTTTAACTTTGAGAACAGACAAGATATGACTTGCACACCATCCTTTCTTTTCCATTTTTGAGGAAA
.....................................................................................((((.((((....)))).)))).....((((..((((((..((.((((.......)))))).......))))))..(((((....)))))....))))...................................................................
.....................................................................................86................................................................................................184................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
........................................................................................................................................................TACTGAAGACCTGTAGACATGGGAAGGT...................................................................... 28 1 6.00 6.00 - - 2.00 - - - 3.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................AGCAAGGACAAAAATACTGAAGACCTGTA................................................................................... 29 1 6.00 6.00 2.00 1.00 - - 1.00 - - - - - - 1.00 - 1.00 - - - - - - - - - - - - - - -
......................................................................................................................................TGTAAGCAAGGACAAAAATACTGAAGACC....................................................................................... 29 1 4.00 4.00 3.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............TAAGAAATATGAATTCTTCAGAAGCAAGt............................................................................................................................................................................................................... 29 t 4.00 2.00 1.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................TGAGAACAGACAAGATATGACTTGCACAC............................ 29 1 3.00 3.00 - 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
........................................................................................................................................................TACTGAAGACCTGTAGACATGGGAAGa....................................................................... 27 a 3.00 1.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................AAGACCTGTAGACATGGGAAGGTACCAC................................................................. 28 1 3.00 3.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............TAAGAAATATGAATTCTTCAGAAGCAA................................................................................................................................................................................................................. 27 1 3.00 3.00 1.00 - - - - 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - -
..............TAAGAAATATGAATTCTTCAGAAGCA.................................................................................................................................................................................................................. 26 1 2.00 2.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................AAATACTGAAGACCTGTAGACATGGGAAGGT...................................................................... 31 1 2.00 2.00 - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................TGAAGACCTGTAGACATGGGAAGGT...................................................................... 25 1 2.00 2.00 - - - - - - - - 1.00 - - - - - - - - - 1.00 - - - - - - - - - -
..............TAAGAAATATGAATTCTTCAGAAGCAAGAG.............................................................................................................................................................................................................. 30 1 2.00 2.00 - - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............TGTAAGAAATATGAATTCTTCAGAAGCA.................................................................................................................................................................................................................. 28 1 2.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
....................................................................................................................................GATGTAAGCAAGGACAAAAATACTGAAG.......................................................................................... 28 1 2.00 2.00 - 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................................................AGCAAGGACAAAAATACTGAAGACCTG..................................................................................... 27 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................TACTGAAGACCTGTAGACATGGGAAGGTA..................................................................... 29 1 2.00 2.00 - - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................GACATGGGAAGGTACCACTTTAACTTT........................................................ 27 1 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 1.00 - - - - -
..............TAAGAAATATGAATTCTTCAGAAGCAAG................................................................................................................................................................................................................ 28 1 2.00 2.00 - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................TACTGAAGACCTGTAGACATGGGAAGat...................................................................... 28 at 2.00 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................AGCAAGGACAAAAATACTGAAGACCTGT.................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................GACAAAAATACTGAAGACCTGTAGACAT.............................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
............................................................................................................................................................................................AACTTTGAGAACAGACAAGATATGACTTG................................. 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................ACAAAAATACTGAAGACCTGTAGACATGGG........................................................................... 30 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................TCTTGACAGAGATGAAATAAACGGT....................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.............................................................................................................................................................AAGACCTGTAGACATGGGAAGGTA..................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
..............TAAGAAATATGAATTCTTCAGAAGCAAGAGT............................................................................................................................................................................................................. 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
......................................................................................................................................TGTAAGCAAGGACAAAAATACTGAAGt......................................................................................... 27 t 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................TGAGAACAGACAAGATATGACTTGCACACCt.......................... 31 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............TAAGAAATATGAATTCTTCAGAAGCAAGA............................................................................................................................................................................................................... 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TGTAAGCAAGGACAAAAATACTGAAGAC........................................................................................ 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................AATACTGAAGACCTGTAGACATGGGAAG........................................................................ 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................CTGAAGACCTGTAGACATGGGAAGatat.................................................................... 28 atat 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............TGTAAGAAATATGAATTCTTCAGAAGC................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................GTAGACATGGGAAGGTACCACTTTAA............................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................AAGACCTGTAGACATGGGAAGGTACCAtt................................................................ 29 tt 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
....................................................................................................................................................AAAATACTGAAGACCTGTAGACATGGGAAGa....................................................................... 31 a 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
......................................................................................................................................................AATACTGAAGACCTGTAGACATGGGAAGa....................................................................... 29 a 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................AAGACCTGTAGACATGGGAAGGTACCACTT............................................................... 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................AAGACCTGTAGACATGGGAAGGTACCA.................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................TAAGCAAGGACAAAAATACTGAAGACCTGTA................................................................................... 31 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..............TAAGAAATATGAATTCTTCAGAAGCAAGAa.............................................................................................................................................................................................................. 30 a 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................TACTGAAGACCTGTAGACATGGGAAG........................................................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................TACTGAAGACCTGTAGACATGGGAAGata..................................................................... 29 ata 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............TAAGAAATATGAATTCTTCAGAAGCAAGAt.............................................................................................................................................................................................................. 30 t 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................TACTGAAGACCTGTAGACATGGGAAGattt.................................................................... 30 attt 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................ATACTGAAGACCTGTAGACATGGGAAGa....................................................................... 28 a 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................TGTAAGCAAGGACAAAAATACTGAAGA......................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................TGAATTCTTCAGAAGCAAGAGTTACAGt....................................................................................................................................................................................................... 28 t 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........................................................................................................................................................................................TTTAACTTTGAGAACAGACAAGATATGACTT.................................. 31 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................ATGAATTCTTCAGAAGCAAGAGTTACAGa....................................................................................................................................................................................................... 29 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
........................................................................................................................................................TACTGAAGACCTGTAGACATGGGAAGGTt..................................................................... 29 t 1.00 6.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............TAAGAAATATGAATTCTTCAGAAGC................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................................................TGTAAGCAAGGACAAAAATACTGAAGACt....................................................................................... 29 t 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................GACATGGGAAGGTACCACTTTAACTTTG....................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TAACTTTGAGAACAGACAAGATATGACTTG................................. 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................GATGTAAGCAAGGACAAAAATACTGAA........................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.....................................................................................................................................................AAATACTGAAGACCTGTAGACATGGGAAGGTt..................................................................... 32 t 1.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................AAGACCTGTAGACATGGGAAGGTACCACT................................................................ 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................AGCAAGGACAAAAATACTGAAGACCTGTAGt................................................................................. 31 t 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................GGACAAAAATACTGAAGACCTGTAGA................................................................................. 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................AAGCAAGGACAAAAATACTGAAGACCTGTA................................................................................... 30 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................ATGTAAGCAAGGACAAAAATACTGAAG.......................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................ATGTAAGCAAGGACAAAAATACTGAAGACC....................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
.................................AGAAGCAAGAGTTACAG........................................................................................................................................................................................................ 17 4 0.25 0.25 - - - - - - - - - - - - - - 0.25 - - - - - - - - - - - - - -

Antisense strand
GTCTCAGAAATTTGTAAGAAATATGAATTCTTCAGAAGCAAGAGTTACAGGTACAGAATCTGTTTCTCATTCAGAAATTTCATTTTTTTTTCTTGACAGAGATGAAATAAACGGTAATTTTAGTTATCACTTGATGTAAGCAAGGACAAAAATACTGAAGACCTGTAGACATGGGAAGGTACCACTTTAACTTTGAGAACAGACAAGATATGACTTGCACACCATCCTTTCTTTTCCATTTTTGAGGAAA
.....................................................................................((((.((((....)))).)))).....((((..((((((..((.((((.......)))))).......))))))..(((((....)))))....))))...................................................................
.....................................................................................86................................................................................................184................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)