| Gene: Prpf39 | ID: uc007nqx.1_intron_11_0_chr12_66156752_f.5p | SPECIES: mm9 |
|
|
(1) OTHER.ip |
(2) OTHER.mut |
(1) OVARY |
(5) PIWI.ip |
(2) PIWI.mut |
(21) TESTES |
| AAAGAAACCCATGGCACACATGCTTTGGGCAGCTTTTGAGGAACAACAGGGTAAGAAAAAGAATGTTCAGTTGATTTAATTTATGTATTTACTTTATATGAATGGGTGTTTTGCCTGCATGCCTATCCATACGAAGTGTTTGCAGATACCAGTAGAGTGTATGGGAATTTCAGGGACTACACTAAACAGGGTTGAGGGTGCTGAGAAGTGAGCCTGGGTCCTCTACAACAGCAGCCAGTGCTCCTATCTG |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | GSM475281(GSM475281) total RNA. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTAAGAAAAAGAATGTTCAGTTGATTTAATTTATGTATTTACTTTATATGAA.................................................................................................................................................... | 52 | 1 | 133.00 | 133.00 | 133.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TTTGGGCAGCTTTTGAGGAACAACAGG........................................................................................................................................................................................................ | 27 | 1 | 44.00 | 44.00 | - | 16.00 | 7.00 | 9.00 | 3.00 | 3.00 | 1.00 | 1.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - |
| .......................TTTGGGCAGCTTTTGAGGAACAACAG......................................................................................................................................................................................................... | 26 | 1 | 11.00 | 11.00 | - | 1.00 | 2.00 | 2.00 | - | - | 1.00 | - | 1.00 | - | 1.00 | - | 1.00 | - | - | 1.00 | - | - | 1.00 | - | - | - |
| .......................TTTGGGCAGCTTTTGAGGAACAACAGGG....................................................................................................................................................................................................... | 28 | 1 | 10.00 | 10.00 | - | 2.00 | 3.00 | 1.00 | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................CTTTGGGCAGCTTTTGAGGAACAACAG......................................................................................................................................................................................................... | 27 | 1 | 4.00 | 4.00 | - | 1.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TTTGGGCAGCTTTTGAGGAACAACAGGt....................................................................................................................................................................................................... | 28 | t | 3.00 | 44.00 | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................CTTTGGGCAGCTTTTGAGGAACAACAGG........................................................................................................................................................................................................ | 28 | 1 | 3.00 | 3.00 | - | 1.00 | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................TGCTTTGGGCAGCTTTTGAGGAACAAC........................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .......................TTTGGGCAGCTTTTGAGGAACAACAGt........................................................................................................................................................................................................ | 27 | t | 2.00 | 11.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................TGCTTTGGGCAGCTTTTGAGGAACAACt.......................................................................................................................................................................................................... | 28 | t | 2.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................TGCTTTGGGCAGCTTTTGAGGAACAACA.......................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................TGGGCAGCTTTTGAGGAACAACAGGGg...................................................................................................................................................................................................... | 27 | g | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................CTTTGGGCAGCTTTTGAGGAACAACAGGGgaat................................................................................................................................................................................................... | 33 | gaat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .............GCACACATGCTTTGttt............................................................................................................................................................................................................................ | 17 | ttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..........................GGGCAGCTTTTGAGGAACAACAGGGg...................................................................................................................................................................................................... | 26 | g | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................TTTGGGCAGCTTTTGAGGAACAACAta........................................................................................................................................................................................................ | 27 | ta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ....................TGCTTTGGGCAGCTTTTGAGG................................................................................................................................................................................................................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .......................TTTGGGCAGCTTTTGAGGAACAACAa......................................................................................................................................................................................................... | 26 | a | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................TGGGCAGCTTTTGAGGAACAACAGGGT...................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................TGCTTTGGGCAGCTTTTGAGGAACAA............................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................GCTTTGGGCAGCTTTTGAGGAACAACAG......................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TTTGGGCAGCTTTTGAGGAACAACAGaa....................................................................................................................................................................................................... | 28 | aa | 1.00 | 11.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........TGGCACACATGCTTTGGGCAGCTTT...................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TTTGGGCAGCTTTTGAGGAACAACAGGGg...................................................................................................................................................................................................... | 29 | g | 1.00 | 10.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .......................TTTGGGCAGCTTTTGAGGAACAACAGtt....................................................................................................................................................................................................... | 28 | tt | 1.00 | 11.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................TGCTTTGGGCAGCTTTTGAGGAACAAt........................................................................................................................................................................................................... | 27 | t | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........TGGCACACATGCTTTGGGCAGCTTTTG.................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TTGGGCAGCTTTTGAGGAACAACAGGG....................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........TGGCACACATGCTTTGGGCAGCTTTT..................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AAAGAAACCCATGGCACACATGCTTTGGGCAGCTTTTGAGGAACAACAGGGTAAGAAAAAGAATGTTCAGTTGATTTAATTTATGTATTTACTTTATATGAATGGGTGTTTTGCCTGCATGCCTATCCATACGAAGTGTTTGCAGATACCAGTAGAGTGTATGGGAATTTCAGGGACTACACTAAACAGGGTTGAGGGTGCTGAGAAGTGAGCCTGGGTCCTCTACAACAGCAGCCAGTGCTCCTATCTG |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | GSM475281(GSM475281) total RNA. (testes) | mjTestesWT2() Testes Data. (testes) |
|---|