| Gene: Eapp | ID: uc007nnu.1_intron_1_0_chr12_55779611_r.3p | SPECIES: mm9 |
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(4) PIWI.ip |
(2) PIWI.mut |
(13) TESTES |
| CATCTTGCCAGCCTTATATGACTTTTTAAAAAAAACCTGATAAATGTGTGTGTGTTTGTGTGTGTGTTTTATGAGTTCCTCAAATATGTAAAGTATTAATAAAACTGGCTAACTTACAGTGTTTCTTTTAAAAAAAAGAAGAGATCAGGATTTGGTAGATTAATGTATTTTTCCTTCCCAAATTTATTTTTCTGTTTTAGTTATCATGCTTTTGGATTGCAAAGGCCACGTCAGAAACAACAGCCTGTTC ............................................................................................................((((...((((.(((((((((.......)))))))))..((((((((..((..((....))..))....))))))))......)))).)))).................................................. ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
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| .....................................................................................ATGTAAAGTATTAATAAAACTGGCTAACTTACAGTGTTTCTTTTAAAAAAAA................................................................................................................. | 52 | 1 | 39.00 | 39.00 | 39.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................TGGATTGCAAAGGCCACGTCAGAAACAAC......... | 29 | 1 | 11.00 | 11.00 | - | 3.00 | 3.00 | 3.00 | - | - | 1.00 | - | - | - | - | 1.00 | - |
| ....................................................................................................................................................................................................................TGGATTGCAAAGGCCACGTCAGAAACAA.......... | 28 | 1 | 4.00 | 4.00 | - | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TGCTTTTGGATTGCAAAGGCCACGTCAGA............... | 29 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................TTGGATTGCAAAGGCCACGTCAGAAACAAC......... | 30 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................GGATTGCAAAGGCCACGTCAGAAACAAC......... | 28 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................TTGGATTGCAAAGGCCACGTCAGAAAC............ | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................TTTGGATTGCAAAGGCCACGTCAGAA.............. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...................................................................................................................................................................................................................TTGGATTGCAAAGGCCACGTCAGAAACAA.......... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................TGGTAGATTAATGTctga................................................................................ | 18 | ctga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..................................................................................................................................................................................................................................CACGTCAGAAACAACAGCCTGT.. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TGCTTTTGGATTGCAAAGGCCACGTCAG................ | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................GGATTGCAAAGGCCACGTCAGAAACA........... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................TGGATTGCAAAGGCCACGTCAGAAACAACt........ | 30 | t | 1.00 | 11.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................GGATTGCAAAGGCCACGTCAGAAACAAtt........ | 29 | tt | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................TGGATTGCAAAGGCCACGTCAGAAACA........... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..................................................................................................................................AAAAAAAGAAGAGATCAGGATTTGGTAGAT.......................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| CATCTTGCCAGCCTTATATGACTTTTTAAAAAAAACCTGATAAATGTGTGTGTGTTTGTGTGTGTGTTTTATGAGTTCCTCAAATATGTAAAGTATTAATAAAACTGGCTAACTTACAGTGTTTCTTTTAAAAAAAAGAAGAGATCAGGATTTGGTAGATTAATGTATTTTTCCTTCCCAAATTTATTTTTCTGTTTTAGTTATCATGCTTTTGGATTGCAAAGGCCACGTCAGAAACAACAGCCTGTTC ............................................................................................................((((...((((.(((((((((.......)))))))))..((((((((..((..((....))..))....))))))))......)))).)))).................................................. ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
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| ....................................................TGTGTGTGTGTTTTATtgcc.................................................................................................................................................................................. | 20 | tgcc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |