chr12:8348825 8349424 +
(7)
OTHER.mut 		(5)
PIWI.ip 		(3)
PIWI.mut 		(1)
TDRD1.ip 		(31)
TESTES

Sense strand
GAAATGGACATCTTGCAGTATATCCGGGACCATGACACACTTGCCCAAGACTCCCCCAGCCTCTTCTGACTTCCCCACAACCCTGCCTTTCACCCTATGCTGGGCCTGGGGAGGAGGCCTGTATGTGACTATGTGGGTTCTGCTTACCAGGCAGGGACTCCCCAGCCCCAGTCCCACATCCTTCTTTTCTCTTGGGCTATGGGATGGACAAGGACTCTCTGCAGACTGTAGAGCTGGGAACACCACAGGAATTAAGCCGTATCATGTCCACCCAGCGGGCTATGGAAAGGAGGGCATTTGTGAGCATGTCTTGAGATCAGAGGACAGTGCCCCCACCAAGGGAAAGGACATCTTCTTCATACTTGTACCCACTGGCTCTGCCAGCTCAGCATGGGAAGTGGGGCTTATCCTGAGCCTAGGCTGGGCTAAAGGAGAACATGGGACAGGCCACTCTGAACTCTCTACTTAGCATGGCTGCTCGGGCCCCCAAGGTGTGTTCTGAGGAGAAAGACCAGCTCTCCAGGCTGCCCTGACCCAAGTCCCTTCTCAGGCTCTTCTGGCTTCCAATGCTAAGAAGAAAACGTAGTCCCAGCCTTGCCT
............................................................................................................................................................................................................................................................................................................((((((.(((..(((.((((((((..((((((((.....)))...)).)))..))......(((((.((((....((((...((((((((.((((...(((((....)))))..)))).))))))))...))))....)))))))))...)))))).)))............))))))))).......................................................................................................................
.....................................................................................................................................................................................................................................................................................................294...........................................................................................................................................................................................484..................................................................................................................
 Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR037903(GSM510439)
testes_rep4. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCTCTACTTAGCATGGCTGCTC........................................................................................................................ 27 1 162.00 162.00 50.00 45.00 36.00 28.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAACTCTCTACTTAGCATGGCTGC.......................................................................................................................... 27 1 43.00 43.00 14.00 12.00 8.00 7.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCTCTACTTAGCATGGCTGCTCGG...................................................................................................................... 29 1 14.00 14.00 4.00 4.00 4.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAAGAAGAAAACGTAGTCCCAGCC...... 27 1 12.00 12.00 5.00 5.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCTCTACTTAGCATGGCTGgtc........................................................................................................................ 27 gtc 12.00 0.00 7.00 3.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAACTCTCTACTTAGCATGGCTGCTC........................................................................................................................ 29 1 11.00 11.00 1.00 5.00 3.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAACTCTCTACTTAGCATGGCTGCT......................................................................................................................... 28 1 11.00 11.00 3.00 6.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTAAAGGAGAACATGGGACAGGCC....................................................................................................................................................... 28 1 7.00 7.00 3.00 3.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCTCTACTTAGCATGGCTGCTCG....................................................................................................................... 28 1 6.00 6.00 - 1.00 3.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTCTCTACTTAGCATGGCTGCTC........................................................................................................................ 28 1 5.00 5.00 - 1.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................TGTGAGCATGTCTTGAGATCAGAGGA.................................................................................................................................................................................................................................................................................... 26 1 5.00 5.00 4.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCTCTACTTAGCATGGCTGCT......................................................................................................................... 26 1 5.00 5.00 - - 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
.......................................................................................................................................................................................................TGGGATGGACAAGGACTCTCTGCAGACTG.................................................................................................................................................................................................................................................................................................................................................................................... 29 1 5.00 5.00 1.00 1.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....TGGACATCTTGCAGTATATCCGGGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 4.00 4.00 1.00 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....TGGACATCTTGCAGTATATCCGGGACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 4.00 4.00 - 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTCTGAACTCTCTACTTAGCATGGCT............................................................................................................................ 29 1 3.00 3.00 - 1.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCTCTACTTAGCATGGCTGC.......................................................................................................................... 25 1 3.00 3.00 - 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTCTCTACTTAGCATGGCTGCT......................................................................................................................... 27 1 3.00 3.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATGCTAAGAAGAAAACGTAGTCCC.......... 28 1 3.00 3.00 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAACTCTCTACTTAGCATGGCTG........................................................................................................................... 26 1 3.00 3.00 1.00 - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCTCTACTTAGCATGGCTGCTt........................................................................................................................ 27 t 3.00 5.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................TGGGATGGACAAGGACTCTCTGCAGAC...................................................................................................................................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................ACCCAGCGGGCTATGGAAAGGAGGGt................................................................................................................................................................................................................................................................................................................. 26 t 2.00 0.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................TGAGATCAGAGGACAGTGCCCCCACC....................................................................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - 1.00 - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTAAAGGAGAACATGGGACAGG......................................................................................................................................................... 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................TTTTCTCTTGGGCTATGGGATGGAC....................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 2.00 2.00 - - - - - 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................TGTGAGCATGTCTTGAGATCAGAGGAC................................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................TGAGCATGTCTTGAGATCAGAGGACAGT................................................................................................................................................................................................................................................................................ 28 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..............................................................................................................................................................................................................................................................................CCCAGCGGGCTATGGAAAGGAGGGCAT............................................................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................TGAGCATGTCTTGAGATCAGAGGACAG................................................................................................................................................................................................................................................................................. 27 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............TTGCAGTATATCCGGGACCATGACACAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 28 1 2.00 2.00 - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGCTAAAGGAGAACATGGG.............................................................................................................................................................. 22 1 2.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................TGGGATGGACAAGGACTCTCTGCAGACT..................................................................................................................................................................................................................................................................................................................................................................................... 28 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGGCTAAAGGAGAACATGGGAC............................................................................................................................................................ 26 1 2.00 2.00 - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................TGGGAAGTGGGGCTTATCCTGAGCCTA...................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGGACAAGGACTCTCTGCAGACTGTA.................................................................................................................................................................................................................................................................................................................................................................................. 26 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..........................................................................................................................................................................................................................................................................................................TGTGAGCATGTCTTGAGATCAGAGGACAG................................................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................TTCTTTTCTCTTGGGCTATGGGATGG......................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCTCTACTTAGCATGGC............................................................................................................................. 22 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................CGGGACCATGACACACTTGCCCAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAACTCTCTACTTAGCATGGCTGCTCt....................................................................................................................... 30 t 1.00 11.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAAGAAAACGTAGTCCCAGCCTTGCC. 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGCTGGGCTAAAGGAGAACATGGGt............................................................................................................................................................. 27 t 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................TGGGATGGACAAGGACTCTCTGCAGACa..................................................................................................................................................................................................................................................................................................................................................................................... 28 a 1.00 2.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................TGTGAGCATGTCTTGAGATCAGAGG..................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................TATGGAAAGGAGGGCATTTGTGAGC....................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAACTCTCTACTTAGCATGGCTGgtc........................................................................................................................ 29 gtc 1.00 3.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCTAAAGGAGAACATGGGACAGGCCA...................................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTCTCTACTTAGCATGGCTtct......................................................................................................................... 27 tct 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................CAGGAATTAAGCCGTATCATGTCCACCC....................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................GGATGGACAAGGACTCTCTGCAGACTGTAGAGCT............................................................................................................................................................................................................................................................................................................................................................................. 34 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..................TATATCCGGGACCATGACACACTTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
..........................................................................................................................................................................................................................................................................................................TGTGAGCATGTCTTGAGATCAGAGGAaa.................................................................................................................................................................................................................................................................................. 28 aa 1.00 5.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................TGCAGACTGTAGAGCTGGGAACACCACA................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCTCTACTTAGCATGGCTGCTCc....................................................................................................................... 28 c 1.00 162.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGAACATGGGACAGGCCACTCT.................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGAGAACATGGGACAGGCCACTC................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAAGAAGAAAACGTAGTCCCAGCCT..... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCATGGCTGCTCGGGCCCCCAAGG............................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCTCTACTTAGCATGGCTGCTCGt...................................................................................................................... 29 t 1.00 6.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........CTTGCAGTATATCCGGGACCATGACACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGAAAGACCAGCTCTCCAGGCTa......................................................................... 28 a 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................CCAGCTCAGCATGGGAAGTGG....................................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................ACCCAGCGGGCTATGGAAAGGAGGGC................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGGACAAGGACTCTCTGCAGACTGTAG................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAGGCTCTTCTGGCTTCCAATGCT............................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................ATGGACAAGGACTCTCTGCAGACTGTA.................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
........................................................................................................................................................................................TTTTCTCTTGGGCTATGGGATGGACAA..................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................TGGAAAGGAGGGCATTTGTGAGCAT..................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TGTAGAGCTGGGAACACCACAGGAA............................................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAACTCTCTACTTAGCATGGCTGCaa........................................................................................................................ 29 aa 1.00 43.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................TGAGATCAGAGGACAGTGCCCCCACa....................................................................................................................................................................................................................................................................... 26 a 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAACTCTCTACTTAGCATGGCTGaa......................................................................................................................... 28 aa 1.00 3.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAGTCCCAGCCTTGCCT 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.......................................................................................................................................................................................................TGGGATGGACAAGGACTCTCTGCA......................................................................................................................................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTCTGAACTCTCTACTTAGCATGGC............................................................................................................................. 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................TGGGAACACCACAGGAATTAAGCCGT.................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................AGCGGGCTATGGAAAGGAGGGCATT.............................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................TGACACACTTGCCCAAGACTCCCCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................TGGAAAGGAGGGCATTTGTGAGCATG.................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAAGAAAACGTAGTCCCAGCCTTGC.. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................CATGACACACTTGCCCAAGACTCCCCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................CACCCAGCGGGCTATGGAAAGGAGGGC................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACTCTCTACTTAGCATGGCTGCTCGG...................................................................................................................... 30 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAAGAAGAAAACGTAGTCCCAGCCTT.... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATGCTAAGAAGtcag................... 19 tcag 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
...........................................................................................................................................................................................TCTCTTGGGCTATGGGATGGACAAGGAC................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCCAATGCTAAGAAGAAAACGTA............... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAAGAAAACGTAGTCCCAGCCTcgcc. 29 cgcc 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................TTGTGAGCATGTCTTGAGATCAGAGG..................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................GCGGGCTATGGAAAGGAGGGCATTTG............................................................................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.................................................................................................................................................................................................................................CTGTAGAGCTGGGAACACCACAGGA.............................................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............TTGCAGTATATCCGGGACCATGACACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGAACTCTCTACTTAGCATGGCTGC.......................................................................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........TCTTGCAGTATATCCGGGACCATGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGGAGAACATGGGACAGGCCACT.................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................TTCTCTTGGGCTATGGGATGGACAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGCTGGGCTAAAGGAGAACATGG............................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
............................................................................................................................................................................................................................................................................................................TGAGCATGTCTTGAGATCAGAGGAaa.................................................................................................................................................................................................................................................................................. 26 aa 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................GGGATGGACAAGGACTCTCTGCAGACTG.................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................TTGTGAGCATGTCTTGAGATCAGAGGA.................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................CTTTTCTCTTGGGCTAgc............................................................................................................................................................................................................................................................................................................................................................................................................... 18 gc 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTACTTAGCATGGCTGCTC........................................................................................................................ 22 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................TGGGATGGACAAGGACTCTCTGCAGA....................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTCTCTACTTAGCATGGCTGCTCGG...................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...............................................................................................TATGCTGGGCCTGGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 17 3 0.33 0.33 - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - -

Antisense strand
GAAATGGACATCTTGCAGTATATCCGGGACCATGACACACTTGCCCAAGACTCCCCCAGCCTCTTCTGACTTCCCCACAACCCTGCCTTTCACCCTATGCTGGGCCTGGGGAGGAGGCCTGTATGTGACTATGTGGGTTCTGCTTACCAGGCAGGGACTCCCCAGCCCCAGTCCCACATCCTTCTTTTCTCTTGGGCTATGGGATGGACAAGGACTCTCTGCAGACTGTAGAGCTGGGAACACCACAGGAATTAAGCCGTATCATGTCCACCCAGCGGGCTATGGAAAGGAGGGCATTTGTGAGCATGTCTTGAGATCAGAGGACAGTGCCCCCACCAAGGGAAAGGACATCTTCTTCATACTTGTACCCACTGGCTCTGCCAGCTCAGCATGGGAAGTGGGGCTTATCCTGAGCCTAGGCTGGGCTAAAGGAGAACATGGGACAGGCCACTCTGAACTCTCTACTTAGCATGGCTGCTCGGGCCCCCAAGGTGTGTTCTGAGGAGAAAGACCAGCTCTCCAGGCTGCCCTGACCCAAGTCCCTTCTCAGGCTCTTCTGGCTTCCAATGCTAAGAAGAAAACGTAGTCCCAGCCTTGCCT
............................................................................................................................................................................................................................................................................................................((((((.(((..(((.((((((((..((((((((.....)))...)).)))..))......(((((.((((....((((...((((((((.((((...(((((....)))))..)))).))))))))...))))....)))))))))...)))))).)))............))))))))).......................................................................................................................
.....................................................................................................................................................................................................................................................................................................294...........................................................................................................................................................................................484..................................................................................................................
 Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR037903(GSM510439)
testes_rep4. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAGGAGAAAGACCAtg...................................................................................... 19 tg 5.00 0.00 - - - - - - - - - - 3.00 2.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TCCCCAGCCCCAGTCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 5 0.20 0.20 - - - - - - - - - - - - - - - - - - 0.20 - - - - - - - - - - - -