| Gene: Dnmt3a | ID: uc007mxb.1_intron_4_0_chr12_3872879_f | SPECIES: mm9 |
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|
(5) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(2) PIWI.mut |
(19) TESTES |
| CCACAGGCAAAGAACAGAAGCAGACCAACATCGAATCCATGAAAATGGAGGCAAGTGTTTTCCTCACCCACAGGGGCCCTGTGGGTCCTGATTCTAGAAGAAAACCACCTCTCTGATGGACTGTGGCGAGTGTGTGTGAGGGGCCCGAGGGTGGGTCCTGCCCCATCTTTGGTTGTTCCTTGTGAGAGGGAGAGGAAGTGGGGGTGGAGGTTGGAAGTCCCCTAGTGAGGCAGCCAGCTCATCCCCCTCCAGAGGTCAAGCACTTCCCCTCTCTGCCTTGTTCATGAGTCCCTGCCAACTCCTAATCCCTCCTCAGAGGGTCAGCCCCTCTGGCCAGGAACCAGAATTTCTATACTCTGGGATGAGTGACCCCTCTCAGTTTCCCCTCCAGGAGGAATGAACCCTGCAGAGTACCTGTGCCCACCTTAATACCTGCCTGTCTCTCTGTCCTAGGGCTCCCGGGGCCGACTGCGAGGTGGCTTGGGCTGGGAGTCCAGCCTCCG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT3() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................TCTGATGGACTGTGGCGAGTGTGTGT.............................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 4.00 | 4.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ....................................................................................................................TGGACTGTGGCGAGTGTGTGTGAGG.......................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | - | - | - | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTTGGGCTGGGAGTCCAGC..... | 23 | 1 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................AGCAGACCAACATCGAATCCATGAAAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........AAGAACAGAAGCAGACCt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 18 | t | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................TGAACCCTGCAGAGTACCTGTGCCCAC............................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...............................................................................................AGAAGAAAACCACCTCTCTGATGGACTGT........................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATACCTGCCTGTCTCTCTGTCa..................................................... | 25 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................................................................GATGGACTGTGGCGAGTGTGTGTGA............................................................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TGGACTGTGGCGAGTGTGTGTGAGGGGC....................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................TCTTTGGTTGTTCCTTGTGAGAGcga........................................................................................................................................................................................................................................................................................................................ | 26 | cga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..........AGAACAGAAGCAGACCAACAa........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 21 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................TATACTCTGGGATGAGTGACCCCTCT............................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .CACAGGCAAAGAACAGAAGCAGACCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................TGTGGGTCCTGATTCTAGAAGAAAgcta............................................................................................................................................................................................................................................................................................................................................................................................................ | 28 | gcta | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TGGACTGTGGCGAGTGTGTGTGAG........................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAGGTGGCTTGGGCTGGGAGTa......... | 25 | a | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................AAGTGGGGGTGGAGGcgc.................................................................................................................................................................................................................................................................................................. | 18 | cgc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...................................................................................................................ATGGACTGTGGCGAGTGTGTGTGA............................................................................................................................................................................................................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..ACAGGCAAAGAACAGAAGCAGACCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................AAGCAGACCAACATCGAATCCATGAAt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | t | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................CAGAATTTCTATACTCTG................................................................................................................................................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .............................................................................CCTGTGGGTCCTGATTCTAGAAGAAAA............................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................TCTTTGGTTGTTCCTTGTGAGAGG.......................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................AGCAGACCAACATCGAATCCATGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................TACTCTGGGATGAGTGACCCCTCTCA............................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAGGTGGCTTGGGCTG............... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .................................................................................................AAGAAAACCACCTCTCTGATGGACTGTG.......................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................ACTCTGGGATGAGTGACCCCTCTCA............................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGGGCTGGGAGT.......... | 15 | 3 | 0.33 | 0.33 | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGAGGAATGAAC..................................................................................................... | 16 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - |
| CCACAGGCAAAGAACAGAAGCAGACCAACATCGAATCCATGAAAATGGAGGCAAGTGTTTTCCTCACCCACAGGGGCCCTGTGGGTCCTGATTCTAGAAGAAAACCACCTCTCTGATGGACTGTGGCGAGTGTGTGTGAGGGGCCCGAGGGTGGGTCCTGCCCCATCTTTGGTTGTTCCTTGTGAGAGGGAGAGGAAGTGGGGGTGGAGGTTGGAAGTCCCCTAGTGAGGCAGCCAGCTCATCCCCCTCCAGAGGTCAAGCACTTCCCCTCTCTGCCTTGTTCATGAGTCCCTGCCAACTCCTAATCCCTCCTCAGAGGGTCAGCCCCTCTGGCCAGGAACCAGAATTTCTATACTCTGGGATGAGTGACCCCTCTCAGTTTCCCCTCCAGGAGGAATGAACCCTGCAGAGTACCTGTGCCCACCTTAATACCTGCCTGTCTCTCTGTCCTAGGGCTCCCGGGGCCGACTGCGAGGTGGCTTGGGCTGGGAGTCCAGCCTCCG |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT3() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR014234(GSM319958) Ovary total. (ovary) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................................................................................................................................................................................GCACTTCCCCTCTCTGCCTTGTTCA........................................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................AAGCAGACCAACATCGAATCCATGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................CCACAGGGGCCCTGTGGGTCCTGATTCTA....................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................CCCCTCTGGCCAGGAACCAGAATTTCTAT...................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................TCTGCCTTGTTCATGA........................................................................................................................................................................................................................ | 16 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - | - | - | - | - |