| Gene: Mafg | ID: uc007mtu.1_intron_1_0_chr11_120491196_r.3p | SPECIES: mm9 |
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|
(3) OTHER.mut |
(1) OVARY |
(6) PIWI.ip |
(22) TESTES |
| CCTTCACATTGCTCCTGCTTCTTCCCTGGGAAAAAAATCTCCCGACCTCCCACCTGGCTCTCTAGGGACAGGGCCTTCTGAAGCAGCCAAGCTCAGGTCAGGTGAGGGGCAAGGTTCTGTGGGCTGAGCACCAGGCAGCAAGCTTCCTGTTGGGGTGTAAAAGAGTCTCAGGGTCCTGACCTATGCTCTGTGTCTTGCAGAGTGCCTGCTCACTGTGTCCCCCGGGTTATGACGACCCCCAATAAAGGAA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014234(GSM319958) Ovary total. (ovary) | mjTestesWT2() Testes Data. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................................................TGCTCACTGTGTCCCCCGGGTTATGACGAC.............. | 30 | 1 | 15.00 | 15.00 | 1.00 | - | 4.00 | - | 3.00 | 1.00 | - | 5.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TCACTGTGTCCCCCGGGTTATGACGACCCC........... | 30 | 1 | 10.00 | 10.00 | 6.00 | 1.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............................................................TCTAGGGACAGGGCCTTCTGAAGCAGC................................................................................................................................................................... | 27 | 1 | 9.00 | 9.00 | - | - | - | 3.00 | - | 1.00 | 1.00 | - | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..............................................................................................................................................................................................................TGCTCACTGTGTCCCCCGGGTTATGAC................. | 27 | 1 | 7.00 | 7.00 | - | - | 1.00 | 1.00 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - |
| ..............................................................TAGGGACAGGGCCTTCTGAAGCAGC................................................................................................................................................................... | 25 | 1 | 6.00 | 6.00 | - | 1.00 | - | 1.00 | - | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..............................................................................................................................................................................................................TGCTCACTGTGTCCCCCGGGTTATGACG................ | 28 | 1 | 5.00 | 5.00 | - | - | 1.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TCACTGTGTCCCCCGGGTTATGACGAC.............. | 27 | 1 | 4.00 | 4.00 | - | - | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TCACTGTGTCCCCCGGGTTATGACGACC............. | 28 | 1 | 4.00 | 4.00 | 1.00 | - | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................TAGGGACAGGGCCTTCTGAAGCAGCC.................................................................................................................................................................. | 26 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TGTGTCCCCCGGGTTATGACGACCCC........... | 26 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................TTCTGTGGGCTGAGCACCAGGCAG................................................................................................................ | 24 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TGCCTGCTCACTGTGTCCCCCGGGTT...................... | 26 | 1 | 2.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TCACTGTGTCCCCCGGGTTATGACGAg.............. | 27 | g | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TGCTCACTGTGTCCCCCGGGTTATGACGACC............. | 31 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................CACTGTGTCCCCCGGGTTATGACG................ | 24 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TCACTGTGTCCCCCGGGTTATGACGACCC............ | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TGTGTCCCCCGGGTTATGACGACCCCCA......... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TGTGTCCCCCGGGTTATGACGACCCCCAta....... | 30 | ta | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................GTTCTGTGGGCTGAGCACCAGG................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ............................................................TCTAGGGACAGGGCCTTCTGAAGCAG.................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TGCTCACTGTGTCCCCCGGGT....................... | 21 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TGCTCACTGTGTCCCCCGGGTTATtac................. | 27 | tac | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................TCTAGGGACAGGGCCTTCTGAAGCAGCC.................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................CTGTGTCCCCCGGGTTATGACGACCCCCc......... | 29 | c | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................TGGGCTGAGCACCAGGCAGCAAGCTT......................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............TGCTTCTTCCCTGGGAAAAAAATCTCC................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................TTCCCTGGGAAAAAAATCTCCCGACC........................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................GCTCACTGTGTCCCCCGGGTTATGAC................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................GTGAGGGGCAAGGTTCTGTGGGCTag........................................................................................................................... | 26 | ag | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................TGTGTCCCCCGGGTTATGACGACCCCC.......... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................TCCTGTTGGGGTGTAAAAGAGTgt.................................................................................. | 24 | gt | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................TAGGGACAGGGCCTTCTGAAGCAG.................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................TGTGGGCTGAGCACCAGGCAGCAAG............................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TGCCTGCTCACTGTGTCCCCCGGGTTA..................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TGCTCACTGTGTCCCCCGGGTTATG................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................CACTGTGTCCCCCGGGTTATGACGACCCC........... | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TGCTCACTGTGTCCCCCGGGTTATGACGA............... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................CAAGGTTCTGTGGGCTGAGCACCAGGC.................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................CTGTGTCCCCCGGGTTATGACGACCCCC.......... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................AAAATCTCCCGACCTCCCACCTGG................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................TGCTCACTGTGTCCCCCGGGTTATGACGt............... | 29 | t | 1.00 | 5.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TCACTGTGTCCCCCGGGTTATGACGACa............. | 28 | a | 1.00 | 4.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................AGGGACAGGGCCTTCTGAAGCAGCCt................................................................................................................................................................. | 26 | t | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................TCACTGTGTCCCCCGGGTTATGACGAgc............. | 28 | gc | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................GTGGGCTGAGCACCAGGCAGCAAGCTTCC....................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................TTCCTGTTGGGGTGTAAAAGAGTCTC................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CCTTCACATTGCTCCTGCTTCTTCCCTGGGAAAAAAATCTCCCGACCTCCCACCTGGCTCTCTAGGGACAGGGCCTTCTGAAGCAGCCAAGCTCAGGTCAGGTGAGGGGCAAGGTTCTGTGGGCTGAGCACCAGGCAGCAAGCTTCCTGTTGGGGTGTAAAAGAGTCTCAGGGTCCTGACCTATGCTCTGTGTCTTGCAGAGTGCCTGCTCACTGTGTCCCCCGGGTTATGACGACCCCCAATAAAGGAA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesWT4() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014234(GSM319958) Ovary total. (ovary) | mjTestesWT2() Testes Data. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................GCTTCCTGTTGGGGTGTAAAAGAGTCTCA................................................................................ | 29 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................TGCCTGCTCACTGTGTCCCCCGGGTTA..................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................AGCTTCCTGTTGGGGTGTAAAAGAGTCTCA................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...................................................................................................................................................................AGTCTCAGGGTCCTGACCTATGCTC.............................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |