| Gene: Ccdc40 | ID: uc007mqf.1_intron_16_0_chr11_119115777_f.5p | SPECIES: mm9 |
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(4) OTHER.mut |
(3) PIWI.ip |
(1) PIWI.mut |
(16) TESTES |
| CCGGGCAGACAGAGATCCGTGCTATGAAGGCCGAGATCCACAGGATGAAGGTAAGCTGTCTCAGCACTGTGGGCACGGGTCGTCCCGTAGGCTGCACATTGGGCCACATCGGGAACCGGAGCCACCCTGCCAGTGACAGTCGTTGAGATTCCCAGGTGGGGACCTGCTGCTGCTGGACAGTGACTGCATTCTAGCAAATGTGGCTGCAAGCTCTGTGTCACCACCCACCTCTCACACCAGGATATGCCTA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................ACATCGGGAACCGGAGCCACCCTGCCAGTGACAGTCGTTGAGATTCCCAGGT............................................................................................. | 52 | 1 | 63.00 | 63.00 | 63.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................GTAGGCTGCACATTGGtta................................................................................................................................................. | 19 | tta | 10.00 | 0.00 | - | 8.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ......................................................................................GTAGGCTGCACATTGGtt.................................................................................................................................................. | 18 | tt | 4.00 | 0.00 | - | - | 3.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................TAAGCTGTCTCAGCACTGTGGGCACGG............................................................................................................................................................................ | 27 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | 2.00 | - | - | 1.00 | - | - | - | - | - |
| .............................................................................................................................................................................TGGACAGTGACTGCATTCTAGCAAATGT................................................. | 28 | 1 | 3.00 | 3.00 | - | - | - | - | - | 1.00 | - | - | - | 2.00 | - | - | - | - | - | - |
| ....................................................................................................................................................................TGCTGCTGCTGGACAGTGACTGCATTC........................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ........................TGAAGGCCGAGATCCACAGGATGAAtt....................................................................................................................................................................................................... | 27 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................................................................................CGTAGGCTGCACATTGGttat................................................................................................................................................ | 21 | ttat | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TGAAGGCCGAGATCCACAGGATGAAa........................................................................................................................................................................................................ | 26 | a | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................TGCTGGACAGTGACTGCATTCTAGCA...................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ........................................................................................AGGCTGCACATTGGttat................................................................................................................................................ | 18 | ttat | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................TGCCAGTGACAGTCGTTGAGATTCCC................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................GTAGGCTGCACATTGGttt................................................................................................................................................. | 19 | ttt | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................GTAGGCTGCACATTGGt................................................................................................................................................... | 17 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................TAGGCTGCACATTGGtta................................................................................................................................................. | 18 | tta | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .............................................TGAAGGTAAGCTGTCTCAGCACTGTGGGC................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................TGCTATGAAGGCCGAGATCCACAGGATGAA......................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................CAGGATGAAGGTAAGCTGTCTCAGCAC....................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................GATCCACAGGATGAAGGTAAGCTGTCTC............................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .......................................................................................TAGGCTGCACATTGGttaa................................................................................................................................................ | 19 | ttaa | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................TGACAGTCGTTGAGATTCCCAGGTGGGGAC....................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................GTAGGCTGCACATTGGct.................................................................................................................................................. | 18 | ct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .....................................................................................................................................TGACAGTCGTTGAGATTCCCAGGTGGGGA........................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .....CAGACAGAGATCCGTGCTATGAAGGCCG......................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| CCGGGCAGACAGAGATCCGTGCTATGAAGGCCGAGATCCACAGGATGAAGGTAAGCTGTCTCAGCACTGTGGGCACGGGTCGTCCCGTAGGCTGCACATTGGGCCACATCGGGAACCGGAGCCACCCTGCCAGTGACAGTCGTTGAGATTCCCAGGTGGGGACCTGCTGCTGCTGGACAGTGACTGCATTCTAGCAAATGTGGCTGCAAGCTCTGTGTCACCACCCACCTCTCACACCAGGATATGCCTA |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................CCCTGCCAGTGACAGTCGTTGAGAgggg...................................................................................................... | 28 | gggg | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................GCCAGTGACAGTCGTTGAGATTCCCA................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................CCACCCACCTCTCACACCAGGATA...... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ........................................................................................................................GCCACCCTGCCAGTGACAGTCGTTGAGA...................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...............................................................................................................................TGCCAGTGACAGTCGTTGAGATTCCCA................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................CCGTGCTATGAAGGCCGAGATCCACA................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |