| Gene: Pgs1 | ID: uc007moj.1_intron_7_0_chr11_117876037_f.3p | SPECIES: mm9 |
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(5) OTHER.mut |
(1) OVARY |
(6) PIWI.ip |
(21) TESTES |
| ATAGTTTTCCCACCAGCTCTAACTGTTGAGCTAAATCAGCGATATACAGAGGCAGAGCCTCTTGGCTGGGGTCCTCAGGAGGCTGTGTGGCTGGCGCCTCTGGCCGGTCTTGTGGACAGACAGCTAGCTCTGCTGTACCAGGTGTCTAGGAACCACAGAGTGACCCACATCTAGTGCCTGACTGTCCTTTCTCTCCTCAGGAGCAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTGACCTCCGCAACCTT ...........................................................................................................................................(((.(((.(((...(((((((((...))).))).)))))))))...))).............................................................. .............................................................................................................................126.......................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................................TAGTGCCTGACTGTCCTTTCTCTCCT..................................................... | 26 | 1 | 6.00 | 6.00 | 4.00 | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGTGCCTGACTGTCCTTTCTCTCC...................................................... | 25 | 1 | 5.00 | 5.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TGCTGTACCAGGTGTCTAGGAACCAC.............................................................................................. | 26 | 1 | 4.00 | 4.00 | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................TGGCTGGGGTCCTCAGGAGGCTGTGTGG................................................................................................................................................................ | 28 | 1 | 4.00 | 4.00 | - | - | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................TACCAGGTGTCTAGGAACCACAGAGT......................................................................................... | 26 | 1 | 3.00 | 3.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............................................................................................................CTTGTGGACAGACAGCTAGC.......................................................................................................................... | 20 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................TGCTGTACCAGGTGTCTAGGAACCACA............................................................................................. | 27 | 1 | 3.00 | 3.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TGTTGAGCTAAATCAGCGATATACAGA........................................................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGTGCCTGACTGTCCTTTCTCTCa...................................................... | 25 | a | 2.00 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TCTGGCCGGTCTTGTGGACAGACAGCT............................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGCTAAATCAGCGATATACAGAGGCA.................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................TACAGAGGCAGAGCCTCTTGGCTGGGGT.................................................................................................................................................................................. | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................TGGCTGGGGTCCTCAGGAGGCTGTGTG................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGTGCCTGACTGTCCTTTCTCTCCTC.................................................... | 27 | 1 | 2.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TACCTGCGGTCTGGTGTGGTGACCTC......... | 26 | 1 | 2.00 | 2.00 | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TCTGGCCGGTCTTGTGGACAGACAGC.............................................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................TGGCCGGTCTTGTGGACAGACAGCTA............................................................................................................................ | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................TGGCCGGTCTTGTGGACAGACAGCTAG........................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................TTGGCTGGGGTCCTCAGGAGGCTGTGg.................................................................................................................................................................. | 27 | g | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGTGCCTGACTGTCCTTTCTCTC....................................................... | 24 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................GCTAAATCAGCGATATACAGAGGtaga.................................................................................................................................................................................................. | 27 | taga | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................TTGGCTGGGGTCCTCAGGAGGCTGT.................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGTGCCTGACTGTCCTTTCTata....................................................... | 24 | ata | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGTGCCTGACTGTCCTTTCTCTaaat.................................................... | 27 | aaat | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................TAAATCAGCGATATACAGAGGCAGAGCC............................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................TGACTGTCCTTTCTCTCCTCAGGAGCA............................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................TGTCTAGGAACCACAGAGTGACCCACAT................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................................................................................................................................................................................................................TCTACCTGCGGTCTGGTGTGGTGACCTC......... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................CGGTCTTGTGGACAGACAGC.............................................................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................TCTGGCCGGTCTTGTGGACAGACAGCTA............................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGCTAAATCAGCGATATACAGAGGCAt................................................................................................................................................................................................... | 29 | t | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...............................TAAATCAGCGATATACAGAGGCAGAGC................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TACCTGCGGTCTGGTGTGGTGACCTtt........ | 27 | tt | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................GGAGCAAGAGCAGCTCTACCTGCGGgctg...................... | 29 | gctg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...........................................................................................................................................................................TAGTGCCTGACTGTCCTTTCTCTCCTCA................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................TACCTGCGGTCTGGTGTGGTGACCTt......... | 26 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...............................TAAATCAGCGATATACAGAGGCAGAG................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................TGCGGTCTGGTGTGGTGACC........... | 20 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................CCAGGTGTCTAGGAACCACAGAGTGACC..................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..................................................................................................................................................TAGGAACCACAGAGTGACCCACATtttg............................................................................ | 28 | tttg | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................CTCTGCTGTACCAGGTGTCTAGGAACC................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................TGTACCAGGTGTCTAGGAACCACAGAG.......................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................TGACTGTCCTTTCTCTCCTCAGGAGCAAGA.......................................... | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................TTGGCTGGGGTCCTCAGGAGGC....................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TAGTGCCTGACTGTCCTTTCTCTCtta.................................................... | 27 | tta | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................TGGCCGGTCTTGTGGACAGACAGCTAGa.......................................................................................................................... | 28 | a | 1.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................GAGCAGCTCTACCTGCGGTCTGGTGT.................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGAGCTAAATCAGCGATATACAGAGGC..................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................TGACTGTCCTTTCTCTCCTCAGGAGCAA............................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ATAGTTTTCCCACCAGCTCTAACTGTTGAGCTAAATCAGCGATATACAGAGGCAGAGCCTCTTGGCTGGGGTCCTCAGGAGGCTGTGTGGCTGGCGCCTCTGGCCGGTCTTGTGGACAGACAGCTAGCTCTGCTGTACCAGGTGTCTAGGAACCACAGAGTGACCCACATCTAGTGCCTGACTGTCCTTTCTCTCCTCAGGAGCAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTGACCTCCGCAACCTT ...........................................................................................................................................(((.(((.(((...(((((((((...))).))).)))))))))...))).............................................................. .............................................................................................................................126.......................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT4() Testes Data. (testes) | mjTestesWT3() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR014234(GSM319958) Ovary total. (ovary) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................TACAGAGGCAGAGCCTggt.............................................................................................................................................................................................. | 19 | ggt | 3.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - |
| ......CACCAGCTCTAACcaga................................................................................................................................................................................................................................... | 17 | caga | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................TACAGAGGCAGAGCCTgt.............................................................................................................................................................................................. | 18 | gt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |