| Gene: Tnrc6c | ID: uc007mni.1_intron_4_0_chr11_117584865_f.3p | SPECIES: mm9 |
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(1) OTHER.ip |
(4) OTHER.mut |
(5) PIWI.ip |
(2) PIWI.mut |
(1) TDRD1.ip |
(26) TESTES |
| TTCATACTGAGACCAAACAGTTTGGAGCTGGTCGCACCCTGTACTCTCCTCCTTAGCCTCTGAGCTGATACACCCTGTGGAGTTTGCAGCTGTTGGCATTGCCAGCAGAGGCAGGGGCTCCTTGGACGTGCAGGGTGATGAGGTCTGTTGATTTGGAATGGCACAGCTTGACTTTCACTTGCATTCTCCCCCATTCCCAGTTTCATCCGGCTGGGGAGAGATGCCCAGTGTTCACTCCAAGGCCGAGAAC ..............................................................(((((...(((((((((((((((((..((((((((...))))))))..))))..)))))........))))))))...(((((....))))).........))))).................................................................................. ............................................................61.........................................................................................................168................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGGCAC...................................................................................... | 26 | 1 | 55.00 | 55.00 | 11.00 | 17.00 | 1.00 | 6.00 | 8.00 | 1.00 | 4.00 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGGCACA..................................................................................... | 27 | 1 | 35.00 | 35.00 | 10.00 | 7.00 | 3.00 | 5.00 | 1.00 | - | 1.00 | 4.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - |
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGGCA....................................................................................... | 25 | 1 | 13.00 | 13.00 | 2.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | 3.00 | - | - | - | - | - | 1.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | 1.00 |
| .................................................................................................................................................TGTTGATTTGGAATGGCACAGCTTGA............................................................................... | 26 | 1 | 8.00 | 8.00 | 6.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGGC........................................................................................ | 24 | 1 | 7.00 | 7.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | 1.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - |
| ...................................................................ATACACCCTGTGGAGTTTGCAG................................................................................................................................................................. | 22 | 1 | 7.00 | 7.00 | - | - | - | - | - | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................TGTTGATTTGGAATGGCACAGCTTGAC.............................................................................. | 27 | 1 | 7.00 | 7.00 | 2.00 | 3.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......TGAGACCAAACAGTTTGGAGCTGGTCGC....................................................................................................................................................................................................................... | 28 | 1 | 5.00 | 5.00 | - | 2.00 | - | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................TGGACGTGCAGGGTGATGAGGTCTGT...................................................................................................... | 26 | 1 | 4.00 | 4.00 | 1.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TGATTTGGAATGGCACAGCTTGACTTT........................................................................... | 27 | 1 | 4.00 | 4.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..........................................................TCTGAGCTGATACACCCTGTGG.......................................................................................................................................................................... | 22 | 1 | 4.00 | 4.00 | - | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGGCACAG.................................................................................... | 28 | 1 | 4.00 | 4.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................GATGAGGTCTGTTGATTTGGAATGGC........................................................................................ | 26 | 1 | 3.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................TGATACACCCTGTGGAGTTTGCAGCTG.............................................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................TGTTGATTTGGAATGGCACAGCTTG................................................................................ | 25 | 1 | 3.00 | 3.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..........................................................TCTGAGCTGATACACCCTGTGGAGTT...................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TGATTTGGAATGGCACAGCTTGACTT............................................................................ | 26 | 1 | 3.00 | 3.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....TACTGAGACCAAACAGTTTGGAGCTGGT.......................................................................................................................................................................................................................... | 28 | 1 | 3.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................ATGAGGTCTGTTGATTTGGAATGGC........................................................................................ | 25 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .................................................................TGATACACCCTGTGGAGTTTGCAGC................................................................................................................................................................ | 25 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGGCACAGC................................................................................... | 29 | 1 | 3.00 | 3.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGGCACt..................................................................................... | 27 | t | 2.00 | 55.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................TGAGCTGATACACCCTGTGGAGTTTGC................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .................................................................................................................................................TGTTGATTTGGAATGGCACAGCTTGt............................................................................... | 26 | t | 2.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGGCACAa.................................................................................... | 28 | a | 2.00 | 35.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGGCACAGCT.................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................TGTACTCTCCTCCTTAGCCTCTGAGC......................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TTGGACGTGCAGGGTGATGAGGTCT........................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...........................CTGGTCGCACCCTGTACTCTCCTtt...................................................................................................................................................................................................... | 25 | tt | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................GAGGTCTGTTGATTTGGAATGGCAC...................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................TGTTGATTTGGAATGGCACAGCTTGACT............................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................TGGCACAGCTTGACTTTCACTTGCATT................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................TGGACGTGCAGGGTGATGAGGTCTGTT..................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................ACCCTGTGGAGTTTGCAGCTGTTGGCAT....................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TTGGACGTGCAGGGTGATGAGGTCTt....................................................................................................... | 26 | t | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................TGGACGTGCAGGGTGATGAGGTCTGTTG.................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................TCTGTTGATTTGGAATGGCACAGCTTG................................................................................ | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................AGGTCTGTTGATTTGGAATGGCACAG.................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................AGAGATGCCCAGTGTTCACTCCAAGGC....... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TGATTTGGAATGGCACAGCTTGACTTTC.......................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................TGGCACAGCTTGACTTTCACTTGCATTC................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................ACGTGCAGGGTGATGAGGTCTGTT..................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGGCACAt.................................................................................... | 28 | t | 1.00 | 35.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................TTGGACGTGCAGGGTGATGAGGTCTG....................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................TCTCCTCCTTAGCCTCTGAGCTGATACAC................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................TTCCCAGTTTCATCCGGCTGGGGAGAGAT............................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................TTGATTTGGAATGGCACAGCTTG................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....TACTGAGACCAAACAGTTTGGAGCTGG........................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................TGGAATGGCACAGCTTGACTTTCACTTG..................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGGCACAGa................................................................................... | 29 | a | 1.00 | 4.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TGATTTGGAATGGCACAGCTTGACT............................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................GTTTCATCCGGCTGGGGAGAGATG........................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................TTGGAGCTGGTCGCACCCTGTACTCTC.......................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .................................................................................................................................................TGTTGATTTGGAATGGCACAGCTTca............................................................................... | 26 | ca | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................AGGTCTGTTGATTTGGAATGGCACAGC................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................TGAGGTCTGTTGATTTGGAATGtc........................................................................................ | 24 | tc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................TACACCCTGTGGAGTTTGCAGCTGTTGGC......................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................TGAGCTGATACACCCTGTGGAGTTTGCA.................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................TGATGAGGTCTGTTGATTTGGAATGGC........................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TTCATACTGAGACCAAACAGTTTGGAGCTGGTCGCACCCTGTACTCTCCTCCTTAGCCTCTGAGCTGATACACCCTGTGGAGTTTGCAGCTGTTGGCATTGCCAGCAGAGGCAGGGGCTCCTTGGACGTGCAGGGTGATGAGGTCTGTTGATTTGGAATGGCACAGCTTGACTTTCACTTGCATTCTCCCCCATTCCCAGTTTCATCCGGCTGGGGAGAGATGCCCAGTGTTCACTCCAAGGCCGAGAAC ..............................................................(((((...(((((((((((((((((..((((((((...))))))))..))))..)))))........))))))))...(((((....))))).........))))).................................................................................. ............................................................61.........................................................................................................168................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
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