| Gene: 1810032O08Rik | ID: uc007mly.1_intron_0_0_chr11_116533071_f | SPECIES: mm9 |
|
|
|
(5) OTHER.mut |
(5) PIWI.ip |
(2) PIWI.mut |
(19) TESTES |
| CCGCGCGGGTCTGTGGTGTTCTCCCTGAAAGGCCTAAGCTTTGGGTGATGGTAAGTTGTGGAAAAGGGAAGATGAGGTTTTTCCTACACATACCGTCGACACGCTTGCTCTCTCCGGAGGTGACGTGTCGACGATCAGCCCTTTCCTTTGCTATTGTGGGCCTTAGGAGGTCTGAGATGCTGTCTAAGGAAATGCTCCCCAGACTGCGAGACGTTTGATGCGGACGGGATGAAGCCCTTTTTGGTCTTCGATCTCCCTTCTCTTGGGGCGGGGAGCGGTCTTCTCTCTGTGACCCAAAGCCAGCCATGTGCTCAGCTCTGTCTTCCCTGGGGTCTCCATTGAGGGTGGTGGCCTTAAGTGAACACGAGTGACTCCTGCTAACTACAGATTGTCATGAACGGGATTGAAAACTGAAAGCCGTTAGCTCTAACGCGGCATAACTTCTCCTTCCCCGAAGGCATTGCCTTTTGGCACTCGGGAGACAAGATGCAGGTTCCGTCTCAGAAG ...............................................................................................................................................................................................................................................................................................................................................................................(((((..(((.......)))...)))))....((((..((.........(((((..........)))))........))..))))....................................................... .....................................................................................................................................................................................................................................................................................................................................................................358................................................................................................457................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTAAGTTGTGGAAAAGGGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 6.00 | 6.00 | - | 2.00 | 1.00 | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAAGTTGTGGAAAAGGGAAGATGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................TAACTACAGATTGTCATGAACGGGAT....................................................................................................... | 26 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCACTCGGGAGACAAGATGCAG............... | 26 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...CGCGGGTCTGTGGTGTTCTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 21 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................ACTACAGATTGTCATGAACGGGATTGAAAACT............................................................................................... | 32 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................ATTGTGGGCCTTAGGAGGTCTGAGATtctg..................................................................................................................................................................................................................................................................................................................................... | 30 | tctg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .....................................................AGTTGTGGAAAAGGGAAGATGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................AAAGGCCTAAGCTTTGGGTGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................CTCCGGAGGTGACGTGTCG......................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ................................CCTAAGCTTTGGGTGATGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 19 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGGGATTccc................................................................................................... | 15 | ccc | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................CTACAGATTGTCATGAACGGGATTG..................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................TGAACGGGATTGAAAACTGAAAGCCGTT..................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ................................................TGGTAAGTTGTGGAAAAGGGAAGATG................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................TGCTAACTACAGATTGTCATGAACGGG......................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........TGTGGTGTTCTCCCTGAAAGGCCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................TAAGTTGTGGAAAAGGGAAGATGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TAAGTTGTGGAAAAGGGAAGATGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAACGCGGCATAACTTCTCCTTCC........................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................ACTACAGATTGTCATGAACGGGATTGAAAACTG.............................................................................................. | 33 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................CTCCCCAGACTGCGAGACG...................................................................................................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................TACAGATTGTCATGAACGGGATTGA.................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCACTCGGGAGACAAGATGCAa............... | 26 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................TGCGAGACGTTTGATGCGGACGGGAT..................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................TGGCCTTAAGTGAACACGAGTGAC....................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................GAGACGTTTGATGCGGACGG........................................................................................................................................................................................................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...................................................TAAGTTGTGGAAAAGGGAAGATGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAAGTTGTGGAAAAGGGAAGATGAGGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................GTGATGGTAAGTTGTGGAAAAGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................ATTGTGGGCCTTAGGAGGTCTGA............................................................................................................................................................................................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .................................................................................................................................................................................................................................................TGGTCTTCGATCTCCCTTCTCTTGGGGCt............................................................................................................................................................................................................................................. | 29 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| CCGCGCGGGTCTGTGGTGTTCTCCCTGAAAGGCCTAAGCTTTGGGTGATGGTAAGTTGTGGAAAAGGGAAGATGAGGTTTTTCCTACACATACCGTCGACACGCTTGCTCTCTCCGGAGGTGACGTGTCGACGATCAGCCCTTTCCTTTGCTATTGTGGGCCTTAGGAGGTCTGAGATGCTGTCTAAGGAAATGCTCCCCAGACTGCGAGACGTTTGATGCGGACGGGATGAAGCCCTTTTTGGTCTTCGATCTCCCTTCTCTTGGGGCGGGGAGCGGTCTTCTCTCTGTGACCCAAAGCCAGCCATGTGCTCAGCTCTGTCTTCCCTGGGGTCTCCATTGAGGGTGGTGGCCTTAAGTGAACACGAGTGACTCCTGCTAACTACAGATTGTCATGAACGGGATTGAAAACTGAAAGCCGTTAGCTCTAACGCGGCATAACTTCTCCTTCCCCGAAGGCATTGCCTTTTGGCACTCGGGAGACAAGATGCAGGTTCCGTCTCAGAAG ...............................................................................................................................................................................................................................................................................................................................................................................(((((..(((.......)))...)))))....((((..((.........(((((..........)))))........))..))))....................................................... .....................................................................................................................................................................................................................................................................................................................................................................358................................................................................................457................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................TCGACGATCAGCCCTTTCCTTTGCTA.................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 8.00 | 8.00 | 1.00 | 1.00 | 2.00 | - | 1.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - |
| ..............................................................................................................................GTCGACGATCAGCCCTTTCCTTTGCTA.................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 4.00 | 4.00 | 1.00 | - | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................CTCTGTCTTCCCTGGGGTCTCCATTGAt..................................................................................................................................................................... | 28 | t | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................GCTTGCTCTCTCCGGcgcg...................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | cgcg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................GACTCCTGCTAACTACAGATTGTCATGA.............................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................GGATGAAGCCCTTTggc........................................................................................................................................................................................................................................................................... | 17 | ggc | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....GGTCTGTGGTGTTCagt...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | agt | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................CAGCTCTGTCTTCCCTGGGGTCTCCA......................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................TCGACGATCAGCCCTTTCCTTTGCTAtt.................................................................................................................................................................................................................................................................................................................................................................. | 28 | tt | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................CGACGATCAGCCCTTTCCTTTGCTAt.................................................................................................................................................................................................................................................................................................................................................................. | 26 | t | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................AGCTCTGTCTTCCCTGGGGTCTCCA......................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........TCTGTGGTGTTCTCCCTGAAAGGCCTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................AGGTGACGTGTCGACGATCAGCC............................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ............................................................................................CCGTCGACACGCTTGCTCTCTCCGG...................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................AGGAGGTCTGAGATGCTGTCTAAGGAAA........................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |