| Gene: Qrich2 | ID: uc007mlc.1_intron_12_0_chr11_116314968_r | SPECIES: mm9 |
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(6) OTHER.mut |
(2) PIWI.ip |
(1) TDRD1.ip |
(23) TESTES |
| GGGAAGGGAGTGAAACCTAACCATCTGAGCTTGCAGCTGGGCATCCTCAGGTGACACTCCTTCGCCACCTCGGGGGTGGGGTGGTGGGGTAGGGTGGTGCATCTGGCCTCATGGTTAAGGCTCAGGTATAGAGGCAGCCTTCCACCTCCCCACATCCGGCAATGGTCATTGTCTCTCATCTGGATTGTACCGGCTCCTCAGGGTGTCCTAGTCTTTACAAGATCTGGTAGAAGGACTCCCCCCACCTCAACATTCCTAAAATGGCAGCACCAGGACTGGGAGGAACGCCAGTGTCCCTCCTTGGGCTATGACCCACCACACCACCCCCTCTCTGACTTGGGATCCCTAGACAGAGGCTCCTGGTGGCCTTATTGTGCTGTGTGTCCCACAGCCAGGCCTCTGCTCTTCTGAGCAAAGGGTTCTGGGCAGTGGTGGGACGAGCTGCTCTCTGACCGCTCCAGAGTCACCGTGTCTGACATCGAGAAGGAGCTGAACGAGCTGAGAGAGAGCC .........................................................................................................................................................................................................................................................................................................................................................................((..((((..(((.((((((.....))))))))).(((.(((((....))))).))).....)))).(((((.(((.(((...)))))).))))).)).................................................... .........................................................................................................................................................................................................................................................................................................................................................................362................................................................................................461................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTGACACTCCTTCGCCACCTCGGGGGTGGGGTGGTGGGGTAGGGTGGTGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................... | 52 | 1 | 212.00 | 212.00 | 212.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................CCATCTGAGCTTGCAGCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 19 | 1 | 8.00 | 8.00 | - | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........TGAAACCTAACCATCTGAGCTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 8.00 | 8.00 | - | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTCTGACATCGAGAAGGAGCTGAACG............... | 29 | 1 | 5.00 | 5.00 | - | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCTGACATCGAGAAGGAGCTGAACGAGC............ | 31 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................CTAACCATCTGAGCTTGCAGCTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TCTGAGCTTGCAGCTGGGCATCCTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................AAGGGTTCTGGGCAGTGGTGGGA.......................................................................... | 23 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGGAGCTGAACGA.............. | 18 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....AGGGAGTGAAACCgtta.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | gtta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............CCTAACCATCTGAGCTTGCAGCTGGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACATCGAGAAGGAGCTGAACGAGCTG.......... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGAGCTGAACGAGCTGAGAGAG.... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGGAGCTGAACGAGCTG.......... | 21 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................CTAGACAGAGGCTCCTtgag.................................................................................................................................................. | 20 | tgag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................TGAGCTTGCAGCTGGGCATCCTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGAAGGAGCTGAACGAGCTGAG........ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACATCGAGAAGGAGCTGAACGAGC............ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACATCGAGAAGGAGCTGA.................. | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCGAGAAGGAGCTGAACGAGCTGAGA....... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| GGGAAGGGAGTGAAACCTAACCATCTGAGCTTGCAGCTGGGCATCCTCAGGTGACACTCCTTCGCCACCTCGGGGGTGGGGTGGTGGGGTAGGGTGGTGCATCTGGCCTCATGGTTAAGGCTCAGGTATAGAGGCAGCCTTCCACCTCCCCACATCCGGCAATGGTCATTGTCTCTCATCTGGATTGTACCGGCTCCTCAGGGTGTCCTAGTCTTTACAAGATCTGGTAGAAGGACTCCCCCCACCTCAACATTCCTAAAATGGCAGCACCAGGACTGGGAGGAACGCCAGTGTCCCTCCTTGGGCTATGACCCACCACACCACCCCCTCTCTGACTTGGGATCCCTAGACAGAGGCTCCTGGTGGCCTTATTGTGCTGTGTGTCCCACAGCCAGGCCTCTGCTCTTCTGAGCAAAGGGTTCTGGGCAGTGGTGGGACGAGCTGCTCTCTGACCGCTCCAGAGTCACCGTGTCTGACATCGAGAAGGAGCTGAACGAGCTGAGAGAGAGCC .........................................................................................................................................................................................................................................................................................................................................................................((..((((..(((.((((((.....))))))))).(((.(((((....))))).))).....)))).(((((.(((.(((...)))))).))))).)).................................................... .........................................................................................................................................................................................................................................................................................................................................................................362................................................................................................461................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesWT2() Testes Data. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR363959(GSM822761) AdultSmall RNA Miwi IPread_length: 36. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR363958(GSM822760) Adult-WTSmall RNA Miwi IP. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | mjTestesWT4() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................................................................................................................................................CCACCACACCACCCCcggc........................................................................................................................................................................................ | 19 | cggc | 8.00 | 0.00 | - | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................CCACCACACCACCCCC....................................................................................................................................................................................... | 16 | 16 | 4.00 | 4.00 | - | 0.81 | 1.62 | - | - | - | - | 1.19 | 0.06 | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | 0.06 |
| .............................................................................................................................................................................................................................................CCCCCCACCTCAACATTCCTAAAA.......................................................................................................................................................................................................................................................... | 24 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................TTCCACCTCCCCACATCC.................................................................................................................................................................................................................................................................................................................................................................. | 18 | 2 | 1.50 | 1.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................CCCACCACACCACCCCaggt........................................................................................................................................................................................ | 20 | aggt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................CCCACCACACCACCCCggc........................................................................................................................................................................................ | 19 | ggc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......GAAACCTAACCAggcg........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 16 | ggcg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTCCAGAGTCACCGTGTCTGACA................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |