chr11:115469878 115470424 -
(7)
OTHER.mut 		(6)
PIWI.ip 		(3)
PIWI.mut 		(1)
TDRD1.ip 		(37)
TESTES

Sense strand
ACTGTCTCTTCCAGCTGGCCCAGCCTGAGAGTCTGAGCAGGGAAGAGGAGGTGAGTGACTGTTGACAGGGCTGTGGAGCCCAGCCATGGAGGGCACTGCTCCTCAGCCAGGTGCTCGGCAGGGACAGCTAAGGCCTGTAGGCATCACTAGACAAACTACAGTGGCTGGAATTTATCCAGCACATAGAGGCCAAGGCTTCACTATTGGAGCCTTGTACTAGGAATGGCAAAAGCTGTGGCCAGCTGTGGGCACAGATGGCCCAGAAATCATCTCAGAGTCGGGTATATGGAAGAGGGTTAAGCGACCGTTTGTGGAGGCAGGCCTGGTTTGGAGTTCAGCCTGGTCAGAATGTTCTGGAAAGCCCCTTTTGGTAAGATTTGGGCCATGCCCCTTGGTGTCAGAATGGAGCGCGGTACTCAGCAGGTGCTGTCACCTCCTTGTGCCATGTTGCTCTGCTCCTCCCTCTGGCTGAGTAGGCCTTGCCACTGCCCCTGCAGGTGGACTGCCTGGTGCTGCAGCTGCACCGGGTCGGGGAGCAGCTGGAGAA
.............................................................................................................................................................................................................................................................................................................................................................................................................(((((..((((((((((((..((.(((((....))))).)).))))).....))...)))))....)))))....(((((....((....)).)))))....................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................398................................................................................................497................................................
 Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesWT3()
Testes Data. (testes) 		mjTestesWT4()
Testes Data. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM475279(GSM475279)
Miwi-IP. (miwi testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes) 		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR037901(GSM510437)
testes_rep2. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
.........................TGAGAGTCTGAGCAGGGAAGAGGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 26 1 18.00 18.00 - 2.00 4.00 - 1.00 - 1.00 - 4.00 - - - - - 1.00 - - - - - - - 2.00 - - - 1.00 - - 1.00 - - - - - - 1.00
....................................................................................................................................................................................................................................................................................GTCGGGTATATGGAAGAGGGTT......................................................................................................................................................................................................................................................... 22 1 6.00 6.00 - - 6.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAATGGAGCGCGGTACTCAGC.............................................................................................................................. 26 1 6.00 6.00 3.00 1.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................CTGTTGACAGGGCTGTGGAGCCCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 4.00 4.00 - - 4.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................TGAGAGTCTGAGCAGGGAAGAGGAGt................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 26 t 3.00 1.00 - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.........................................................................................................................................................................................................................TAGGAATGGCAAAAGCTGTGGCCAGCTGTGt........................................................................................................................................................................................................................................................................................................... 31 t 3.00 0.00 - - - - - - - - - - - - - - - - - 3.00 - - - - - - - - - - - - - - - - - - -
....................CAGCCTGAGAGTCTGAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 1 3.00 3.00 - - - - - - - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGTCAGAATGGAGCGCGGTAC................................................................................................................................... 25 1 3.00 3.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........................TGAGAGTCTGAGCAGGGAAGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 24 1 3.00 3.00 - - - - 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - 1.00 -
.........................................................................................................................................................................................................TATTGGAGCCTTGTACTAGGAATGGC................................................................................................................................................................................................................................................................................................................................ 26 1 3.00 3.00 - - - - 1.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................TGAGAGTCTGAGCAGGGAAGAGGAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 2.00 2.00 - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................AGCCTGAGAGTCTGAGCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 20 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TATTGGAGCCTTGTACTAGGAATGGCAAA............................................................................................................................................................................................................................................................................................................................. 29 1 2.00 2.00 - - - - - - - - - - - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................CTGAGCAGGGAAGAGGAGGTGgaca.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 gaca 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................TTGGAGCCTTGTACTAGGAATGGCAAAAGC.......................................................................................................................................................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
................................................................................................TGCTCCTCAGCCAGGTGCTCGGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................AGGCATCACTAGACAAACTACA................................................................................................................................................................................................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTCAGAATGGAGCGCGGTACTCA................................................................................................................................ 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGTACTAGGAATGGCAAAAGCTGTGGC.................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTCAGAATGGAGCGCGGTAC................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................TCATCTCAGAGTCGGGTATATGGAAGA.............................................................................................................................................................................................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................AGCAGGGAAGAGGAGGTt.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 18 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...........................AGAGTCTGAGCAGGGAAGAGGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...........................................................................................................................................................................................................TTGGAGCCTTGTACTAGGAATGGCAAA............................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................GCCTGAGAGTCTGAGCAGGGAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................TGAGAGTCTGAGCAGGGAAGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TACTAGGAATGGCAAAAGCTGTGGCCAGCT............................................................................................................................................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAATGGAGCGCGGTACTCAGCAGG........................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
......................GCCTGAGAGTCTGAGCAGGGAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TACTAGGAATGGCAAAAGCTGTGGC.................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................GTGAGTGACTGTTGACAGGGCTGTGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................TGAGAGTCTGAGCAGGGAAGAGGAGGTt.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 t 1.00 2.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGTCAGAATGGAGCGCGGTACT.................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................GGAGGGCACTGCTCCTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................TAGGAATGGCAAAAGCTGTGGCCAGCTGT............................................................................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................................................................................................................TAGACAAACTACAGTGGCTGGAATTTATC................................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGCGCGGTACTCAGCAGGTGC........................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCTTGGTGTCAGAATGGAGC.......................................................................................................................................... 24 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................TCTCAGAGTCGGGTATATGGAAGAG............................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................ACAGCTAAGGCCTGTAGGCATCACTAGAC........................................................................................................................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...........................AGAGTCTGAGCAGGGAAGAGGAGGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...................................................TGAGTGACTGTTGACAGGGCTGTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................TAAGCGACCGTTTGTGGAGGCAGGCCT............................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................CAGAAATCATCTCAGAGTCGGGTATA..................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................TCTCAGAGTCGGGTATATGGAAGAGG............................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAGCTGCACCGGGTCGGt.............. 23 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...........................................................................................................................................................................................................TTGGAGCCTTGTACTAGGAATGGCAAAA............................................................................................................................................................................................................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCTTGGTGTCAGAATGGAGCGCGGTAta.................................................................................................................................. 32 ta 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................GCCCCTTTTGGTAAGcaga........................................................................................................................................................................ 19 caga 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................AGCCTGAGAGTCTGAGCAGGGAAGAGGAGGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 32 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TATTGGAGCCTTGTACTAGGAATGGCAA.............................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................TCAGAGTCGGGTATATGGAAGAGGGT.......................................................................................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................GCCAGGTGCTCGGCAGGGACAGCTAAGGC............................................................................................................................................................................................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................TATGGAAGAGGGTTAAGCGACCGTT.............................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................TGGAAAGCCCCTTTTGGTAAGATTTGGGCCAT................................................................................................................................................................. 32 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................TAGGAATGGCAAAAGCTGTGGCCAGCTt.............................................................................................................................................................................................................................................................................................................. 28 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.............................................................................................................................................................................................................................................................................................................................................................TGTTCTGGAAAGCCCCTTTTGGTAAGATT......................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................GTGAGTGACTGTTGACAGGGCTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................TAAGCGACCGTTTGTGGAGGCAGGCCTt.............................................................................................................................................................................................................................. 28 t 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................CCTGAGAGTCTGAGCAGGGAAGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TGTACTAGGAATGGCAAAAGCTGTGGCCAGC................................................................................................................................................................................................................................................................................................................ 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
...................CCAGCCTGAGAGTCTGAGCAGGGAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................TCATCTCAGAGTCGGGTATATGGAAG............................................................................................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................AGCCTGAGAGTCTGAGCAGGGAAGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..............................................................................................................................................................................................................................................................................CTCAGAGTCGGGTATATGGAAGAGG............................................................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................ACAGCTAAGGCCTGTAGGCATCACTAGA............................................................................................................................................................................................................................................................................................................................................................................................................ 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................CCAGCCTGAGAGTCTGAGCAGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................TTGGAGCCTTGTACTAGGAATGGCAA.............................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCATGTTGCTCTGCTCCTCCCTC.................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................AGAAATCATCTCAGAGTCGGGTATA..................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.........................................................................................................................................................................................................................................................................ATCATCTCAGAGTCGGGTATATGGAAGA.............................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................TCTGAGCAGGGAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 16 11 0.09 0.09 - - - - - - - 0.09 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
ACTGTCTCTTCCAGCTGGCCCAGCCTGAGAGTCTGAGCAGGGAAGAGGAGGTGAGTGACTGTTGACAGGGCTGTGGAGCCCAGCCATGGAGGGCACTGCTCCTCAGCCAGGTGCTCGGCAGGGACAGCTAAGGCCTGTAGGCATCACTAGACAAACTACAGTGGCTGGAATTTATCCAGCACATAGAGGCCAAGGCTTCACTATTGGAGCCTTGTACTAGGAATGGCAAAAGCTGTGGCCAGCTGTGGGCACAGATGGCCCAGAAATCATCTCAGAGTCGGGTATATGGAAGAGGGTTAAGCGACCGTTTGTGGAGGCAGGCCTGGTTTGGAGTTCAGCCTGGTCAGAATGTTCTGGAAAGCCCCTTTTGGTAAGATTTGGGCCATGCCCCTTGGTGTCAGAATGGAGCGCGGTACTCAGCAGGTGCTGTCACCTCCTTGTGCCATGTTGCTCTGCTCCTCCCTCTGGCTGAGTAGGCCTTGCCACTGCCCCTGCAGGTGGACTGCCTGGTGCTGCAGCTGCACCGGGTCGGGGAGCAGCTGGAGAA
.............................................................................................................................................................................................................................................................................................................................................................................................................(((((..((((((((((((..((.(((((....))))).)).))))).....))...)))))....)))))....(((((....((....)).)))))....................................................
.............................................................................................................................................................................................................................................................................................................................................................................................................398................................................................................................497................................................
 Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesWT3()
Testes Data. (testes) 		mjTestesWT4()
Testes Data. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM475279(GSM475279)
Miwi-IP. (miwi testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR014236(GSM319960)
10 dpp total. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes) 		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR037901(GSM510437)
testes_rep2. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes) 		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
..........................................................................................................................................................................................................................................................................................................................................GAGTTCAGCCTGGTCAGAATGTTCTGGA............................................................................................................................................................................................. 28 1 15.00 15.00 5.00 2.00 - 2.00 - 5.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................GCCCAGAAATCATCTCAGAGTCGGGTA....................................................................................................................................................................................................................................................................... 27 1 7.00 7.00 3.00 1.00 - - 2.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................GAGTTCAGCCTGGTCAGAATGTTCTGGAA............................................................................................................................................................................................ 29 1 5.00 5.00 2.00 1.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................GTTCAGCCTGGTCAGAATGTTCTGGAA............................................................................................................................................................................................ 27 1 5.00 5.00 3.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................AGTTCAGCCTGGTCAGAATGTTCTGGAA............................................................................................................................................................................................ 28 1 3.00 3.00 1.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................TTGGAGTTCAGCCTGGTCAGAATGTTC................................................................................................................................................................................................. 27 1 3.00 3.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................TTTGGGCCATGCCCCTTGGTGTCAGAATGG............................................................................................................................................. 30 1 3.00 3.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................AGTTCAGCCTGGTCAGAATGTTCTGGA............................................................................................................................................................................................. 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........TCCAGCTGGCCCAGCCTGAGAGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 24 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................GTTCTGGAAAGCCCCTTTTGGTAAGA........................................................................................................................................................................... 26 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................GGAGTTCAGCCTGGTCAGAATGTTCTG............................................................................................................................................................................................... 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................GGAGTTCAGCCTGGTCAGAATGTTCTGGA............................................................................................................................................................................................. 29 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................GTTCAGCCTGGTCAGAATGTTCTGGA............................................................................................................................................................................................. 26 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................GGCCTGGTTTGGAGTTCAGCCTGGTCAGA....................................................................................................................................................................................................... 29 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................TGGAGCCCAGCCATGGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 2 1.50 1.50 - - - - - - - 1.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................GTGGAGGCAGGCCTGGTTTGGAGTTCA.................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................ATGGCCCAGAAATCATCTCAGAGTCGG.......................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................GCCCAGAAATCATCTCAGAGTCGGGTATA..................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........CAGCTGGCCCAGCCTGAGAGTCTGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................CACTAGACAAACTACAGTGGCTGGAA......................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................AGCACATAGAGGCCAAGGCTTCACTA........................................................................................................................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................GATTTGGGCCATGCCCCTTGGTGTCAGAA................................................................................................................................................ 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................CAGCCTGAGAGTCTGAGCAGGGAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
................................................................................................TGCTCCTCAGCCAGGTGCTCGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................TTTGTGGAGGCAGGCCTGGTTTGGAGTTCA.................................................................................................................................................................................................................. 30 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................AGAATGTTCTGGAAAGCCCCTTTTGGTA.............................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
....................................GCAGGGAAGAGGAGGTGAGTGACTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................GGAGTTCAGCCTGGTCAGAATGTTCTGG.............................................................................................................................................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................ACTGCTCCTCAGCCAGGTGCTCGGCAaa........................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 aa 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................TAGACAAACTACAGTGGCTGGAATTTA..................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................TCATCTCAGAGTCGGGTATATGGAAGA.............................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................CATGCCCCTTGGTGTCAGAATGGAGCGCG....................................................................................................................................... 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................CCCAGCCTGAGAGTCTGAGCAGGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................ACTGCTCCTCAGCCAGGTGCTCGGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................GTTCAGCCTGGTCAGAATGTTCTGGAAA........................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................GAGTTCAGCCTGGTCAGAATGTTCTG............................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................CTTGGTGTCAGAATGGAGCGCGGTACTCA................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................CCTGGTTTGGAGTTCAGCCTGGTCAGA....................................................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................TCAGCCTGGTCAGAATGTTCTGGAAA........................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................GGCCCAGAAATCATCTCAGAGTCGGGTA....................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................GCATCACTAGACAAACTA..................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -