chr11:109287295 109287849 +
(1)
OTHER.ip 		(9)
OTHER.mut 		(5)
PIWI.ip 		(4)
PIWI.mut 		(38)
TESTES

Sense strand
CGTGCTAGGACCACCGTGGCAGCTTGAGGGCGGCCTAGAGGCCTGTCCGGGTGAGGGTGGTATGAGGAACCGTCAGGGCTGGGCAGGGGAGGAGGAGGAAGGTGTTGATCGTTGGGGAGGAGCGGATGTGGTGGGAGGGATGGCTGCGGCGGAAGCAGAGGGGACCTCGGGGGCAGGATGTCTCTTGGGAACAACGCGGGCCTTTCCGGTTGCTCCCTGGGTAGAAGACGCGAACTCTGAGTTCCGGGGAGGCCCCCCACTTTTGACTCAAGCAGAGACTGGGTGGCGTCTGCACCGGCCGTGCAAGTTGCTATGGGCAACCAGCTAGCACGTCTGGCGAGACCCACTTGGCGGGAGATGTTCCGGTTATAGAACCGAAGCATCTTAGGCCCCCGGTCCCTGCAGTGACTGTACGATGGCTCCCTGCACACTTCTTCAGCGACACCATCCACGTTGGACTAGGATGTGGAGGCCTTCTGACTTTCCACTCTGTCTCTTTTATTAGGGTGAAGGCCACACCCCTTTGCCAGACATGCATTGTCCTTAGAAAAACAT
..............................................................................................................................................................................................................................................................................................................................................................................................................................((.(((..((.(((..((..(((((((..........)))))))..))..)))))..))).)).(((..........))).............................................................
.....................................................................................................................................................................................................................................................................................................................................................................................................................406................................................................................................505................................................
 Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		GSM475281(GSM475281)
total RNA. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR037902(GSM510438)
testes_rep3. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR028731(GSM400968)
Mili-wt-associated. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM509276(GSM509276)
small RNA cloning by length. (testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)
......................................................................CGTCAGGGCTGGGCAGGGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 22 1 8.00 8.00 8.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................GTATGAGGAACCGTCAGGGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 22 1 7.00 7.00 - - - - 7.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTGACTGTACGATGGCTCCCTGC................................................................................................................................ 27 1 6.00 6.00 - 1.00 1.00 - - - 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGTACGATGGCTCC.................................................................................................................................... 19 1 5.00 5.00 5.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGTTGGACTAGGATGTGGAGGC.................................................................................. 26 1 5.00 5.00 - - 2.00 - - - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACCATCCACGTTGGACTAGGATGTGGA..................................................................................... 31 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................TATAGAACCGAAGCATCTTAGGCCCCC................................................................................................................................................................. 27 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................TCTGAGTTCCGGGGAGGCCCCCCAt....................................................................................................................................................................................................................................................................................................... 25 t 2.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................GTCAGGGCTGGGCAGGGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 1 2.00 2.00 - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - -
.....TAGGACCACCGTGGCAGCTTGAGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 26 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................TGGGCAACCAGCTAGCACGTCTGGCGAG...................................................................................................................................................................................................................... 28 1 2.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...................................................................................................................................................................................GTCTCTTGGGAACAACGC...................................................................................................................................................................................................................................................................................................................................................................... 18 1 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGTTGGACTAGGATGTGGAGGCCT................................................................................ 28 1 2.00 2.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - 1.00 - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTTGGACTAGGATGTGG...................................................................................... 20 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................TCTGAGTTCCGGGGAGGCCCCCCA........................................................................................................................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................AGACGCGAACTCTGAG.......................................................................................................................................................................................................................................................................................................................... 16 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................CAGGGCTGGGCAGGGGAGGAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................GAGGAAGGTGTTGATCGTTGGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................GTCTCTTGGGAACAACGCGGGCCTTT.............................................................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................TCTTAGGCCCCCGGTCCCTGCAGTGACTG................................................................................................................................................ 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................GGGTAGAAGACGCGAACTCTGAGTTCC...................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGACATGCATTGTCCTTA......... 22 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................AGGTGTTGATCGTTGGGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTTGGACTAGGATGTGGAGGCC................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGACTGTACGATGGCTCCCTGCAC.............................................................................................................................. 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TCCCTGGGTAGAAGACGCGAACT............................................................................................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.GTGCTAGGACCACCGTGGCAGCTTGAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................TAGAACCGAAGCATCTTAGGCCCCCGGT.............................................................................................................................................................. 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................CGGATGTGGTGGGAGGGA............................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................CTTGGGAACAACGCGGGCCTTTCCGGTT........................................................................................................................................................................................................................................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................TCTGAGTTCCGGGGAGGCCCCCt......................................................................................................................................................................................................................................................................................................... 23 t 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................TTGACTCAAGCAGAGACTGGGTGGCG........................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTGACTGTACGATGGCTCCCTGCAC.............................................................................................................................. 29 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................TAGAACCGAAGCATCTTAGGCCCCCGGTCCt........................................................................................................................................................... 31 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................AAGACGCGAACTCTGAGTTCCGGGGAGGCC............................................................................................................................................................................................................................................................................................................. 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...................................................................................................................................................................................................................GCTCCCTGGGTAGAAGAC...................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............ACCGTGGCAGCTTGAGGGg............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 19 g 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................................TCCCTGCAGTGACTGTACGATGGCTC..................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................GTATGAGGAACCGTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 18 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTTCTTCAGCGACACCATCCACGT..................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................TAGAACCGAAGCATCTTAGGCCCCCGG............................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......AGGACCACCGTGGCAGCTTGAGGGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACTAGGATGTGGAGGCCTTCT............................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.....TAGGACCACCGTGGCAGCTTGAGGGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....TAGGACCACCGTGGCAGCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCGACACCATCCACGTTGGACTAGGAT.......................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGACTGTACGATGGCTCCCTGCACACT........................................................................................................................... 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................GCAGAGACTGGGTGGCGTCTG....................................................................................................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................GATGTCTCTTGGGAACAACG....................................................................................................................................................................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................ATGAGGAACCGTCAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 16 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGATGTGGAGGCCTTCTGACTTTCC..................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGACATGCATTGTCCTTAGAAAAt... 28 t 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
........................................................................................................................................................................................................................................................................................................................................CACGTCTGGCGAGACCCACTTGGCGGGA....................................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......AGGACCACCGTGGCAGCTTGAGGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................AGTGACTGTACGATGGCT...................................................................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................................GAACCGTCAGGGCTGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACATGCATTGTCCTTAGAAAA.... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
...........................................................................................................................................................................................................................................TCTGAGTTCCGGGGAGGCCCCC.......................................................................................................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTCTCTTTTATTAGGGTGAAGG.......................................... 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................TCTGAGTTCCGGGGAGGCCCCCCttt...................................................................................................................................................................................................................................................................................................... 26 ttt 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................TCTGAGTTCCGGGGAGGCCCCCa......................................................................................................................................................................................................................................................................................................... 23 a 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........ACCACCGTGGCAGCTTGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................CTGAGTTCCGGGGAGGCCCCCCAatat.................................................................................................................................................................................................................................................................................................... 27 atat 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................ACCGTCAGGGCTGGGCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................AGGCCCCCCACTTTTGACTCAAGCAGAGA..................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACACCATCCACGTTGGACTAGGATGT........................................................................................ 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTCTTTTATTAGGGTGAAGGCCAC...................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................CGTTGGGGAGGAGCGGATGTGGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................................................................................................................................TACGATGGCTCCCTGCACACTTCTTC...................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................................AGCATCTTAGGCCCCCGGTCCCTG......................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................TAGCACGTCTGGCGAGACCCACTTG............................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................AACCGTCAGGGCTGGGCAGGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 22 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....TAGGACCACCGTGGCAGCTTGAGGGCGt.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 t 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACGTTGGACTAGGATGTGGAGGC.................................................................................. 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................GGCTGGGCAGGGGAGGAGGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................CTTGAGGGCGGCCTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................GTAGAAGACGCGAACTCTGAG.......................................................................................................................................................................................................................................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................TCTGAGTTCCGGGGAGG............................................................................................................................................................................................................................................................................................................... 17 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................GCGAACTCTGAGTTCCGGGGAGGCCCCCC......................................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TCCCTGGGTAGAAGACGCG................................................................................................................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................ATGAGGAACCGTCAGGGCTGGGCAGc.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 c 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................TCTGAGTTCCGGGGAGGCCCCCC......................................................................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAGACATGCATTGTCCTTAGAAAA.... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGTTGGACTAGGATGTGGAGGCt................................................................................. 27 t 1.00 5.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......AGGACCACCGTGGCAGCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.........................................................................................................................GCGGATGTGGTGGGAGGG................................................................................................................................................................................................................................................................................................................................................................................................................................ 18 3 0.33 0.33 - - - - - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - - - - - - - -

Antisense strand
CGTGCTAGGACCACCGTGGCAGCTTGAGGGCGGCCTAGAGGCCTGTCCGGGTGAGGGTGGTATGAGGAACCGTCAGGGCTGGGCAGGGGAGGAGGAGGAAGGTGTTGATCGTTGGGGAGGAGCGGATGTGGTGGGAGGGATGGCTGCGGCGGAAGCAGAGGGGACCTCGGGGGCAGGATGTCTCTTGGGAACAACGCGGGCCTTTCCGGTTGCTCCCTGGGTAGAAGACGCGAACTCTGAGTTCCGGGGAGGCCCCCCACTTTTGACTCAAGCAGAGACTGGGTGGCGTCTGCACCGGCCGTGCAAGTTGCTATGGGCAACCAGCTAGCACGTCTGGCGAGACCCACTTGGCGGGAGATGTTCCGGTTATAGAACCGAAGCATCTTAGGCCCCCGGTCCCTGCAGTGACTGTACGATGGCTCCCTGCACACTTCTTCAGCGACACCATCCACGTTGGACTAGGATGTGGAGGCCTTCTGACTTTCCACTCTGTCTCTTTTATTAGGGTGAAGGCCACACCCCTTTGCCAGACATGCATTGTCCTTAGAAAAACAT
..............................................................................................................................................................................................................................................................................................................................................................................................................................((.(((..((.(((..((..(((((((..........)))))))..))..)))))..))).)).(((..........))).............................................................
.....................................................................................................................................................................................................................................................................................................................................................................................................................406................................................................................................505................................................
 Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) 		mjTestesWT1()
Testes Data. (testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		GSM509280(GSM509280)
small RNA cloning by length. (testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM475280(GSM475280)
Mili-IP. (mili testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		GSM475281(GSM475281)
total RNA. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR037902(GSM510438)
testes_rep3. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR028731(GSM400968)
Mili-wt-associated. (testes) 		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes) 		SRR014231(GSM319955)
16.5 dpc total. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM509276(GSM509276)
small RNA cloning by length. (testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGACACCATCCACGT..................................................................................................... 18 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCAGCGACACCATCCAC....................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.....................................................................................................................................................................................................GGGCCTTTCCGGTTGCTCCCTGGGTA............................................................................................................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCTGCACACTTgaaa.......................................................................................................................... 19 gaaa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACCATCCACGTTGGACTAGGA........................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCAGCGACACCATCCACGT..................................................................................................... 24 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTCTCTTTTATgaaa..................................................... 19 gaaa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTTCAGCGACACCATCCACGTT.................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTCTTCAGCGACACCATCCA........................................................................................................ 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACCATCCACGTTGGACTA.............................................................................................. 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCAGCGACACtct.............................................................................................................. 15 tct 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCTGCACACTtaaa........................................................................................................................... 18 taaa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACCATCCACgg....................................................................................................... 15 gg 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCCACTCTGTCTCT.......................................................... 18 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGCCTTCTGACTTTCCACTC................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -