| Gene: Ddx42 | ID: uc007lyk.1_intron_1_0_chr11_106085633_f | SPECIES: mm9 |
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(3) OTHER.mut |
(2) PIWI.ip |
(2) PIWI.mut |
(21) TESTES |
| TCTTTCTACAAAATTGGATCTAAACGGGCCAACTTTGATGAAGAAAATGCGTAAGTGATAATTCTTGATGATTAAACCAGTGTGAAATACTAATAATTTTCAGGATTGAAGTTCTTGTCCCCCACCCTGAATTTGCTTGGATTAAGGTATACAGTATTCATGTGCTTGCTTAAATTGTTATTCGGGAATGGTGGGTTTTTTTCCTGATAAGTGTTCTGAACAAGATGAACATAATGATTTTGGTATTTGAGTCAACTGGAGAGTTTTATATTTAATTCAAATGGAGTTTGATGGACTTGTGTTTTGAAGTAGGATCTGATCTGCAATTCCCACAAGGTGAAGAAGTAGCCCTATCTTGCTATGATCATGATCCTTCTACCTTGATCTCCTCCTTTCGAGGGTCACAGACATGTGCCAACAAACCCTGCTGGGAATTCTTACTGTGTAATGCACCACGGTGAAAGCGTGGGCTAGTGAAGGTTTTAGTCTCCTTACTGGTTTGTCTTAATTTTCAGGTATTTTGAAGATGAAGAAGAAGACTCCAGCAATGTAGATTTACCTTACA .................................................................................................................................................................................................................................................................................................................................................................................................................................(((((((.....((((...((.(((...((..((.((((.((....))))))))...))..)))...))..))))....))))))).............................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................416................................................................................................515................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT4() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................GTTATTCGGGAATGGTGGGTTTTTTTCCTGATAAGTGTTCTGAACAAGATGA................................................................................................................................................................................................................................................................................................................................................. | 52 | 1 | 56.00 | 56.00 | 56.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................AACGGGCCAACTTTGATGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 22 | 1 | 3.00 | 3.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................AACGGGCCAACTTTGATGAAGAAAATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATGAAGAAGAAGACTCCAGCAATGT.............. | 30 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .............TTGGATCTAAACGGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGTTTGTCTTActtt...................................................... | 18 | cttt | 2.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATGAAGAAGAAGACTCCAGCAA................. | 27 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAGATGAAGAAGAAGACTCCAGC................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGAAGAAGAAGACTCCAGCA.................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAAGATGAAGActtc............................ | 18 | cttc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................GTTTGATGGACTTGTGTTTTGAAGTAGGATC......................................................................................................................................................................................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATGAAGAAGAAGACTCCAGCAAT................ | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATGTAGATTTACCT.... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................AACGGGCCAACTTTGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTGAAGATGAAGAAGAAGACTCt...................... | 28 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................TTAAGGTATACAGTgggg...................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | gggg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTTGAAGATGAAGAAG.............................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ......................AACGGGCCAACTTTGATGAAGAAAATGCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATGAAGAAGAAGACTCCAGCA.................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................AAACGGGCCAACTTTGATGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGAAGAAGAAGACTCCAGCAATGT.............. | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAAGAAGACTCCAGCAATGTAGAT.......... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............ATTGGATCTAAACGGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..TTTCTACAAAATTGGATCTAAACGGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........AATTGGATCTAAACGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................GGGCCAACTTTGATGAAGAt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 20 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .....................AAACGGGCCAACTTTGATGAAGAAAATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAGATGAAGAAGAAGACTCCAGCAA................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................GGTGGGTTTTTTTCCTag...................................................................................................................................................................................................................................................................................................................................................................... | 18 | ag | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..................................................GTAAGTGATAATTCTTGATGATTAAACCAGTGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 35 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................AATTTGCTTGGATTAAGGTATA.............................................................................................................................................................................................................................................................................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TCTTTCTACAAAATTGGATCTAAACGGGCCAACTTTGATGAAGAAAATGCGTAAGTGATAATTCTTGATGATTAAACCAGTGTGAAATACTAATAATTTTCAGGATTGAAGTTCTTGTCCCCCACCCTGAATTTGCTTGGATTAAGGTATACAGTATTCATGTGCTTGCTTAAATTGTTATTCGGGAATGGTGGGTTTTTTTCCTGATAAGTGTTCTGAACAAGATGAACATAATGATTTTGGTATTTGAGTCAACTGGAGAGTTTTATATTTAATTCAAATGGAGTTTGATGGACTTGTGTTTTGAAGTAGGATCTGATCTGCAATTCCCACAAGGTGAAGAAGTAGCCCTATCTTGCTATGATCATGATCCTTCTACCTTGATCTCCTCCTTTCGAGGGTCACAGACATGTGCCAACAAACCCTGCTGGGAATTCTTACTGTGTAATGCACCACGGTGAAAGCGTGGGCTAGTGAAGGTTTTAGTCTCCTTACTGGTTTGTCTTAATTTTCAGGTATTTTGAAGATGAAGAAGAAGACTCCAGCAATGTAGATTTACCTTACA .................................................................................................................................................................................................................................................................................................................................................................................................................................(((((((.....((((...((.(((...((..((.((((.((....))))))))...))..)))...))..))))....))))))).............................................................. ...............................................................................................................................................................................................................................................................................................................................................................................................................................416................................................................................................515................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT4() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR028731(GSM400968) Mili-wt-associated. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes) |
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| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGGTGAAAGCGTa.................................................................................................. | 16 | a | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTTTGTCTTAATcaca........................................................ | 19 | caca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |