| Gene: 3000004C01Rik | ID: uc007lsy.1_intron_14_0_chr11_102777830_r.5p | SPECIES: mm9 |
|
|
|
(7) OTHER.mut |
(3) PIWI.ip |
(1) PIWI.mut |
(22) TESTES |
| GGAGGGACGCGTAAGCGACCCCCGACACCAGCACCGGGAACCGACGAGAGGTAGGCTTTGGTCGACGGTGGGGCGGCCCCGCGGGCTCGGTGCAGAGCTGTCGTTTGCGCGGGCTCGCTGCAGTTGTCTGGAACCCGAATCAGCACTTGTTTGGGCAGGTCAGGGACGAGTAGGAGGGCACTTCCTTTACACCGAGAATGCAGCCGATCGTGATCTCTGCGTCCCACGGTCCGGGGCCCATATTAAGTCC ..................................................((.(((....))).))..((.(((((((((((((((.((((.....))))..))))))).)))).)))).)).((((((.((.(((((((........)))))))....))..))))))..((((((...))))))................................................................ ..................................................51.....................................................................................................................................186.............................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | GSM475281(GSM475281) total RNA. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................GACGAGTAGGAGGGCcgc.................................................................... | 18 | cgc | 12.00 | 1.50 | - | - | 1.50 | 7.00 | 1.00 | - | 0.50 | - | - | 0.50 | 0.50 | - | - | - | - | - | - | - | - | 0.50 | - | 0.50 |
| ................................................................................................................................................................CAGGGACGAGTAGGAGGGC....................................................................... | 19 | 1 | 12.00 | 12.00 | 12.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................GACGAGTAGGAGGGCcgct................................................................... | 19 | cgct | 11.50 | 1.50 | 3.50 | - | - | - | 2.00 | 4.00 | - | 0.50 | - | 1.50 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................GACGAGTAGGAGGGCcg..................................................................... | 17 | cg | 8.50 | 1.50 | 4.00 | - | - | 0.50 | 1.50 | - | 0.50 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGCTTTGGTCGACGGTGGGGC................................................................................................................................................................................ | 24 | 1 | 7.00 | 7.00 | - | 3.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGCTTTGGTCGACGGTGGGG................................................................................................................................................................................. | 23 | 1 | 5.00 | 5.00 | - | 2.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGCTTTGGTCGACGGTGGGGCG............................................................................................................................................................................... | 25 | 1 | 5.00 | 5.00 | - | 1.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...................................................................................................................................................................GGACGAGTAGGAGGGC....................................................................... | 16 | 2 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................CGAGTAGGAGGGCcgct................................................................... | 17 | cgct | 3.00 | 0.00 | - | - | - | 1.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGCTTTGGTCGACGGTGGGGCGG.............................................................................................................................................................................. | 26 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................TGGTCGACGGTGGGGCGGCCCCGCGGGCTC.................................................................................................................................................................. | 30 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................ACGAGTAGGAGGGCcgct................................................................... | 18 | cgct | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - |
| ..................................................GTAGGCTTTGGTCGACGGTGGG.................................................................................................................................................................................. | 22 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................GACGAGTAGGAGGGtcgc.................................................................... | 18 | tcgc | 2.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGCTTTGGTCGACGGTGGGGCGGC............................................................................................................................................................................. | 27 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGCTTTGGTCGACGGTGG................................................................................................................................................................................... | 21 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................GTCAGGGACGAGTAGGAG.......................................................................... | 18 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGCTTTGGTCGACGGTGGGGCGt.............................................................................................................................................................................. | 26 | t | 2.00 | 5.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ......................................................................................................................TGCAGTTGTCTGGAACCCGAATCAGC.......................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................GACGAGTAGGAGGGC....................................................................... | 15 | 2 | 1.50 | 1.50 | - | - | 0.50 | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| ..................................................................................................................................................................GGGACGAGTAGGAGGGC....................................................................... | 17 | 2 | 1.00 | 1.00 | 0.50 | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGCTTTGGTCGACGGTGGGGa................................................................................................................................................................................ | 24 | a | 1.00 | 5.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................CAGGGACGAGTAGGAGGG........................................................................ | 18 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGCTTTGGTCGACGGTGGGGCa............................................................................................................................................................................... | 25 | a | 1.00 | 7.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................ACGAGTAGGAGGGCcgc.................................................................... | 17 | cgc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..................................................GTAGGCTTTGGTCGACGGTGGGGCGa.............................................................................................................................................................................. | 26 | a | 1.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................CACTTGTTTGGGCAGGTCAGGGACGA................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................CAGGGACGAGTAGGAG.......................................................................... | 16 | 2 | 0.50 | 0.50 | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GGAGGGACGCGTAAGCGACCCCCGACACCAGCACCGGGAACCGACGAGAGGTAGGCTTTGGTCGACGGTGGGGCGGCCCCGCGGGCTCGGTGCAGAGCTGTCGTTTGCGCGGGCTCGCTGCAGTTGTCTGGAACCCGAATCAGCACTTGTTTGGGCAGGTCAGGGACGAGTAGGAGGGCACTTCCTTTACACCGAGAATGCAGCCGATCGTGATCTCTGCGTCCCACGGTCCGGGGCCCATATTAAGTCC ..................................................((.(((....))).))..((.(((((((((((((((.((((.....))))..))))))).)))).)))).)).((((((.((.(((((((........)))))))....))..))))))..((((((...))))))................................................................ ..................................................51.....................................................................................................................................186.............................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT1() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | GSM475281(GSM475281) total RNA. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR069810(GSM610966) small RNA sequencing; sample 2. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................CAGAGCTGTCGTTTGCGCGGGCTCGC.................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................CAGTTGTCTGGAACCCGAATCAGCA......................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |