| Gene: Rara | ID: uc007lia.1_intron_0_0_chr11_98826394_f.5p | SPECIES: mm9 |
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(2) OTHER.mut |
(4) PIWI.ip |
(1) PIWI.mut |
(16) TESTES |
| CAGGAAAGTCCTGCCAAGGCCATTGGCGGAGTTCCCTGGTGTGTTTGCAGGTAGGAGGGTGGTAGTATGCAACCAGGCTCCTGTGTCCCCAAGTGTCCTAACCTCTCTGCCTGGGCTTTGCAGCCGCAGGAGTCTTTCACAGCCTGGCATAACACATGCTGTTGGATGCTTGAGCACAGGAACCGTGTATATCCAGCACTCAACTGGGTACGGATGGAGCTGGGCGGGACTCACTCATCCCTGGTTCTCT ...................................................................................(((...(((((((((....(((.((((...((((....)))))))))))......(((((.((........)).))))).)))))))))...)))........................................................................ ...................................................................................84.............................................................................................179..................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................TAACACATGCTGTTGGATGCTTGAGC........................................................................... | 26 | 1 | 6.00 | 6.00 | 3.00 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................TGGATGCTTGAGCACAGGAACCGTGT.............................................................. | 26 | 1 | 3.00 | 3.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..................................................................................................................................................................TGGATGCTTGAGCACAGGAACCGTGTA............................................................. | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................CTGGGTACGGATGGAGCTGGGCGGGA..................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................TGAGCACAGGAACCGTGTATATCCAGC..................................................... | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................TCAACTGGGTACGGATGGAGCTGGGC......................... | 26 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................................................................................................................................................................TTGAGCACAGGAACCGTGTATATCCA....................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ........................................................................................CCAAGTGTCCTAACCTCTCTGCCTGGGC...................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................TTTGCAGGTAGGAGGaggt............................................................................................................................................................................................ | 19 | aggt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...........TGCCAAGGCCATTGGCGGAGTTCCCTGGT.................................................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................TTGCAGGTAGGAGGGTGGTAGTATGC.................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................CCAGCACTCAACTGGGTACGGATGGA................................ | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................TGCTGTTGGATGCTTGAGCACAGGAAC................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................TAGTATGCAACCAGGCTCCTGTGTCCC................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................TAACACATGCTGTTGGATGCTTGAGCACA........................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ............................................................................................................................................................................AGCACAGGAACCGTGTATATCCAGCAC................................................... | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................GGTACGGATGGAGCTGGGCGGG...................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................CACATGCTGTTGGATGCTTGAGCACAG....................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................AACACATGCTGTTGGATGCTTGAGCA.......................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................TGCTGTTGGATGCTTGAGCACAG....................................................................... | 23 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................TGGGTACGGATGGAGCTG............................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................TGCTGTTGGATGCTTGAGCACAGGA..................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................TGGGTACGGATGGAGCTGGGCGGGA..................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .....................................................................................................................................................TAACACATGCTGTTGGATGCTTGAGCA.......................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| CAGGAAAGTCCTGCCAAGGCCATTGGCGGAGTTCCCTGGTGTGTTTGCAGGTAGGAGGGTGGTAGTATGCAACCAGGCTCCTGTGTCCCCAAGTGTCCTAACCTCTCTGCCTGGGCTTTGCAGCCGCAGGAGTCTTTCACAGCCTGGCATAACACATGCTGTTGGATGCTTGAGCACAGGAACCGTGTATATCCAGCACTCAACTGGGTACGGATGGAGCTGGGCGGGACTCACTCATCCCTGGTTCTCT ...................................................................................(((...(((((((((....(((.((((...((((....)))))))))))......(((((.((........)).))))).)))))))))...)))........................................................................ ...................................................................................84.............................................................................................179..................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesWT2() Testes Data. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR037903(GSM510439) testes_rep4. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................GCAGGAGTCTTTCACAGCCT......................................................................................................... | 20 | 1 | 3.00 | 3.00 | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................GCCGCAGGAGTCTTTCACAGCCTGGCA..................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................GCAGGAGTCTTTCACAGC........................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........................................................................CAGGCTCCTGTGTCCCCAAGTGTCCTA...................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |