| Gene: Rara | ID: uc007lhx.1_intron_0_0_chr11_98799194_f.5p | SPECIES: mm9 |
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(5) OTHER.mut |
(5) PIWI.ip |
(1) PIWI.mut |
(18) TESTES |
| AGACCCTGTGCCCGCAGACACGCAGACGGGTTGCATCCCCTCGCTTCGAGGTAACCTCTCCCCTGGAACCCTGGGGAACCCTCGATTCTCTCACACTTCGGGGCCCGGTGGCCCACTCTGGATGGGAACTGCGGGCGGGGACTGGGTGCCCGGCAGTTTCGACGGGGACCTGGGGTTTCCTGGACTTCCCAGCCTGCCGCTGGCGTGTCCGGGGTTGGGGAGCCCCGTCTGCGCCGCGTCTTCGCGCGCA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................TCTGGATGGGAACTGCGGGCGG................................................................................................................ | 22 | 1 | 14.00 | 14.00 | 9.00 | - | 2.00 | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TCTGGATGGGAACTGCGGGCGGGGA............................................................................................................. | 25 | 1 | 6.00 | 6.00 | 3.00 | - | - | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................GATGGGAACTGCGGGCGG................................................................................................................ | 18 | 1 | 6.00 | 6.00 | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TCTGGATGGGAACTGCGGGCGGGGAC............................................................................................................ | 26 | 1 | 6.00 | 6.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................TGGATGGGAACTGCGGGCGGGGAC............................................................................................................ | 24 | 1 | 4.00 | 4.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................TGGATGGGAACTGCGGGCGGGGA............................................................................................................. | 23 | 1 | 4.00 | 4.00 | - | - | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TCTGGATGGGAACTGCGGGCGGGG.............................................................................................................. | 24 | 1 | 4.00 | 4.00 | - | - | 1.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................TGGATGGGAACTGCGGGCGGGGAa............................................................................................................ | 24 | a | 4.00 | 4.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .................................................................................TCGATTCTCTCACACTTCGGGGCCC................................................................................................................................................ | 25 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................TGGATGGGAACTGCGGGCGGGGACT........................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ....................................................................................................................................................................................TGGACTTCCCAGCCTGCCGCTGGCGTG........................................... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ......TGTGCCCGCAGACACGCAGACGGGTTG......................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - |
| ......TGTGCCCGCAGACACGCAGACGGGTT.......................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - |
| ......................................................................................................................TGGATGGGAACTGCGGGCGGGG.............................................................................................................. | 22 | 1 | 2.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TCCTGGACTTCCCAGCCTGCCGCTGGCGT............................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ...................................................................................................................................................................................................GCCGCTGGCGTGTCCGGGG.................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ......................................................................................................................TGGATGGGAACTGCGGGCGGGGAtt........................................................................................................... | 25 | tt | 1.00 | 4.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................TGGATGGGAACTGCGGGCGGGGACaa.......................................................................................................... | 26 | aa | 1.00 | 4.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................TTCGACGGGGACCTGGGGTTTCCTGt................................................................... | 26 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TCCTGGACTTCCCAGCCTGCCGCTGGCGTG........................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TCTGGATGGGAACTGCGGGCGGGGACTG.......................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TCTGGATGGGAACTGCGGGC.................................................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................TCGGGGCCCGGTGGg.......................................................................................................................................... | 15 | g | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................TTCCTGGACTTCCCAGCCTGCCGCTGGCGTt........................................... | 31 | t | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................TGGATGGGAACTGCGGGCGG................................................................................................................ | 20 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................TGGATGGGAACTGCGGGCGGGGACTGG......................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................ACTCTGGATGGGAACTGCGGGCGGGG.............................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .................................................................................................................CACTCTGGATGGGAACTGCGGGCGG................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| AGACCCTGTGCCCGCAGACACGCAGACGGGTTGCATCCCCTCGCTTCGAGGTAACCTCTCCCCTGGAACCCTGGGGAACCCTCGATTCTCTCACACTTCGGGGCCCGGTGGCCCACTCTGGATGGGAACTGCGGGCGGGGACTGGGTGCCCGGCAGTTTCGACGGGGACCTGGGGTTTCCTGGACTTCCCAGCCTGCCGCTGGCGTGTCCGGGGTTGGGGAGCCCCGTCTGCGCCGCGTCTTCGCGCGCA |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | mjTestesWT2() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................................AGCCTGCCGCTGGCGTGTCCGG...................................... | 22 | 1 | 5.00 | 5.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................GGGAACCCTCGATTCTCTCACACT......................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |