(5)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(2)
PIWI.mut
(26)
TESTES

Sense strand
TCCCATCTTTGGTGACCCCTGGCCGTTCGGCCCCGCCTCCACCGGCCCAGGTCAGACTCCACCCCTCGGCCGCGCGTCCCCACAGGGCAGTCTTTCCGGAGGGAGCTCCCGAGTAGATGCCAAGATCCGCAGCGCCTCTTCTTTGAACCTTTTCCCAACCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTCCCACGCTCCTTTGACTTGTGGTCTTTCCCTTCCCTGATGGGCTTCCGGCGTCTCTCCTTCCCCACTGATTTTATTTTTCTGTTTCCAAATCATATCTGCCTGCCTGCCTTGTCGAAGCCGTATCAGAGGCGGGAAATCTCTTCTTGGCTGGTGAGTACACCTCTTGT
..............................................................................................................(((.((((..((((.((...((((..((......))(((((((.................................)))))))....)))).....))))))..)))))))............................................................................................................................................
............................................................................................................109........................................................................................................................232...............................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
GSM475281(GSM475281)
total RNA. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
...........................................................................................................................................................................................................TTTGACTTGTGGTCTTTCCCTTCCC..................................................................................................................................... 25 1 4.00 4.00 3.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................TGTCGAAGCCGTATCAGAGGCGGGg................................. 25 g 2.00 0.00 - - - - - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................TTCCCTGATGGGCTTCCGGCGTCTCTC............................................................................................................... 27 1 2.00 2.00 - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................TATCAGAGGCGGGAAATCTCTTCTT...................... 25 2 2.00 2.00 - 0.50 - - - - - 0.50 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TGATGGGCTTCCGGCGTCTCTCCTTC........................................................................................................... 26 2 1.50 1.50 - - 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - 0.50 -
.................................................................................................................TAGATGCCAAGATCCGCAGCGCCTCT.............................................................................................................................................................................................................................. 26 2 1.50 1.50 - 0.50 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................TGGGCTTCCGGCGTCTCTCCTTCCC......................................................................................................... 25 2 1.50 1.50 - 1.00 - - - 0.50 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................AGGGAGCTCCCGAGTAGAT................................................................................................................................................................................................................................................... 19 2 1.50 1.50 - - - - - - - - - - - 1.50 - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................................................................................................TCAGAGGCGGGAAATCTCTTCTTGGC................... 26 2 1.50 1.50 1.00 0.50 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................TATCTGCCTGCCTGCCTTGTCGAAGCC................................................ 27 2 1.50 1.50 - 0.50 - - 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................TTTGACTTGTGGTCTTTCCCTTCCCT.................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
...........................................................................................................................................................................................................................TCCCTTCCCTGATGGGCTTCCGGCGT.................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAGGTCCCAtg.................................................................................................................................................................. 29 tg 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
........................................................................................AGTCTTTCCGGAGGGAGCTCCCGAGT....................................................................................................................................................................................................................................................... 26 2 1.00 1.00 - 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - - - - -
........................................................................................................................................................................................................TCCTTTGACTTGTGGTCTTTCCCTTCCC..................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................TCATATCTGCCTGCCTGtct.......................................................... 20 tct 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................GCCTTGTCGAAGCCGTttt........................................... 19 ttt 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................TATCTGCCTGCCTGCCTTGTCGAAG.................................................. 25 2 1.00 1.00 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - 0.50
..............................................................................................................................................................................................................................................................................TTCTGTTTCCAAATCATATCTGCCTGC................................................................ 27 2 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..........................................................................................................................................................................................................CTTTGACTTGTGGTCTTTCCCTTCCCT.................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................TGCCTGCCTGCCTTGTCGAAGCCGTA............................................. 26 2 1.00 1.00 - 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................TTTCCCTTCCCTGATGGGCTTCCGGCGTC................................................................................................................... 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................TTCCCTGATGGGCTTCCGGCGTCTCT................................................................................................................ 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................TTCCAAATCATATCTGCCTGCCTGCCT.......................................................... 27 2 1.00 1.00 - - - 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................TCTGCCTGCCTGCCTTGTCGAAGCCGTA............................................. 28 2 1.00 1.00 - - 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................CCCGAGTAGATGCCAAGATCCG........................................................................................................................................................................................................................................ 22 2 1.00 1.00 - - - - - - - 0.50 - - - - - - - - - - - 0.50 - - - - - - -
.............................................................................................................................TCCGCAGCGCCTCTTCTTTGAACCTTT................................................................................................................................................................................................................. 27 2 1.00 1.00 - 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TGATGGGCTTCCGGCGTCTCTCCT............................................................................................................. 24 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................ATGGGCTTCCGGCGTCTCTCCTTCCC......................................................................................................... 26 2 0.50 0.50 - - - - - - - - - - - - - - - - - - 0.50 - - - - - - - -
..............................................................................................................................................................................................................................................................................................TATCTGCCTGCCTGCCTTGTCGAAGC................................................. 26 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................TGTTTCCAAATCATATCTGCCTGCCTGCCT.......................................................... 30 2 0.50 0.50 - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................TGCCTGCCTTGTCGAAGCCGTATCAG......................................... 26 2 0.50 0.50 - - - - - - - 0.50 - - - - - - - - - - - - - - - - - - -
...............................................................................................................AGTAGATGCCAAGATCCGCAGC.................................................................................................................................................................................................................................... 22 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - 0.50 - - - -
...........................................................................................................................................................................................................................................................................................TCATATCTGCCTGCCTGCCTTGTCG..................................................... 25 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TGATGGGCTTCCGGCGTCTCTCCTTCCt......................................................................................................... 28 t 0.50 0.50 - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................TATCTGCCTGCCTGCCTTGTCGAAGtt................................................ 27 tt 0.50 1.00 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................CGCAGCGCCTCTTCTTTGAACCTTTTC............................................................................................................................................................................................................... 27 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................................................AGAGGCGGGAAATCTCTTCT....................... 20 2 0.50 0.50 - - - - - - - - - - - - - - - - - - 0.50 - - - - - - - -
..............................................................................................................GAGTAGATGCCAAGATCCGCAGCGCCTC............................................................................................................................................................................................................................... 28 2 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................CCCGAGTAGATGCCAAGATCCGCAGC.................................................................................................................................................................................................................................... 26 2 0.50 0.50 - - - - - - - - - 0.50 - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................TTCCGGCGTCTCTCCTTCCCCACTGA................................................................................................... 26 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................TATCTGCCTGCCTGCCTTGTCGAA................................................... 24 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................TGCCTGCCTTGTCGAAGCCGTATC........................................... 24 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - 0.50 - - - - - -
.......................................................................................................................................................................................................................................TGGGCTTCCGGCGTCTCTCCTTCCCC........................................................................................................ 26 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................TGTCGAAGCCGTATCAGAGGCGGGAA................................ 26 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................TGCCAAGATCCGCAGCGCCTCTTCTT.......................................................................................................................................................................................................................... 26 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - 0.50 - - -
..........................................................................................................................................................................................................................................................................................................TGCCTTGTCGAAGCCGTATCAGAGGC..................................... 26 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................................CGGGAAATCTCTTCTTGGC................... 19 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................TGCCTTGTCGAAGCCGTATCAGAGGCG.................................... 27 2 0.50 0.50 - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................TCCCGAGTAGATGCCAAGATCCGCAGC.................................................................................................................................................................................................................................... 27 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................CTGATTTTATTTTTCTGTTTCCAAATC............................................................................ 27 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................TGGGCTTCCGGCGTCTCTCCTTCC.......................................................................................................... 24 2 0.50 0.50 - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TGATGGGCTTCCGGCGTCTCTCCTTCC.......................................................................................................... 27 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................CAGCGCCTCTTCTTTGAACCTTTTC............................................................................................................................................................................................................... 25 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - 0.50 - - - - -
.....................................................................................................................TGCCAAGATCCGCAGCGCCTCTTCTTT......................................................................................................................................................................................................................... 27 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................................GAAGCCGTATCAGAGGCGGGAAATCTC........................... 27 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - 0.50 - -
................................................................................................................GTAGATGCCAAGATCCGC....................................................................................................................................................................................................................................... 18 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................TGCCTGCCTTGTCGAAGCCGTATCA.......................................... 25 2 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - - - - - - -

Antisense strand
TCCCATCTTTGGTGACCCCTGGCCGTTCGGCCCCGCCTCCACCGGCCCAGGTCAGACTCCACCCCTCGGCCGCGCGTCCCCACAGGGCAGTCTTTCCGGAGGGAGCTCCCGAGTAGATGCCAAGATCCGCAGCGCCTCTTCTTTGAACCTTTTCCCAACCATTAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTCCCACGCTCCTTTGACTTGTGGTCTTTCCCTTCCCTGATGGGCTTCCGGCGTCTCTCCTTCCCCACTGATTTTATTTTTCTGTTTCCAAATCATATCTGCCTGCCTGCCTTGTCGAAGCCGTATCAGAGGCGGGAAATCTCTTCTTGGCTGGTGAGTACACCTCTTGT
..............................................................................................................(((.((((..((((.((...((((..((......))(((((((.................................)))))))....)))).....))))))..)))))))............................................................................................................................................
............................................................................................................109........................................................................................................................232...............................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
GSM475281(GSM475281)
total RNA. (testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
...................................................................................................................................................................................................................................TGGGCTTCCGGCGTCcaca................................................................................................................... 19 caca 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.........................................................................................................................................................................................................................................TCCGGCGTCTCTCCgtgg.............................................................................................................. 18 gtgg 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -