(7)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(2)
PIWI.mut
(25)
TESTES

Sense strand
TGCATGACCTGTAACCGCCACGGATGCCGACAAGCTTTCCATGTCACCTGGTGAGATCTCAGAGCCCGGCTGCTGGGAGGTTCAAGGTGGCCACCGAGTGGGAGCATCCTACCTCCTGTCTCGTGCGAGACGGCAGCCACGCCATGCTTAGGTCTTGGGTCCAGGAGGAAGGAGGTGGGGGGCTGCTGTGGTTTGTTTGTGGCTGCACCCTTCTGACCCACTTCTCCTCAGTGCCCAGATGGCTGGCCTGCTGTGTGAGGAAGAAGTCCTGGAGGTGGACA
...................................................((((.(((((((((...))).))))))..))))..((..((((...))))..))..((((((((((..(((.((((((((((((.........))))...))))))....)).)))..))))))))))......................................................................................................
..................................................51..............................................................................................................................179....................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
....TGACCTGTAACCGCCACGGATGCCGACA......................................................................................................................................................................................................................................................... 28 1 21.00 21.00 6.00 4.00 3.00 5.00 - - 1.00 - - - - - - 1.00 - 1.00 - - - - - - - - - -
.........TGTAACCGCCACGGATGCCGACAAGCTT.................................................................................................................................................................................................................................................... 28 1 10.00 10.00 2.00 2.00 2.00 1.00 - - - 2.00 - 1.00 - - - - - - - - - - - - - - - -
.........TGTAACCGCCACGGATGCCGACAAGC...................................................................................................................................................................................................................................................... 26 1 8.00 8.00 5.00 - - - - 2.00 1.00 - - - - - - - - - - - - - - - - - - -
................................................................................................................................................TGCTTAGGTCTTGGGTCCAGGAG.................................................................................................................. 23 1 7.00 7.00 - - - - 7.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................TGTGTGAGGAAGAAGTCCTGGAG....... 23 1 4.00 4.00 - - - - 4.00 - - - - - - - - - - - - - - - - - - - - -
....TGACCTGTAACCGCCACGGATGCCGACAA........................................................................................................................................................................................................................................................ 29 1 4.00 4.00 1.00 - 1.00 - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - -
.......................................................................................................................................................................................................................................TGCCCAGATGGCTGGCCTGCTGTGTG........................ 26 1 3.00 3.00 - 1.00 - - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - -
.........TGTAACCGCCACGGATGCCGACAAG....................................................................................................................................................................................................................................................... 25 1 3.00 3.00 3.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................TGCTGTGTGAGGAAGAAGTCCTGGAG....... 26 1 3.00 3.00 - - 2.00 - - - - - - - - - 1.00 - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................TGGCTGGCCTGCTGTGTGAGGAAGAA................ 26 1 3.00 3.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................GTGAGATCTCAGAGCCCGGCTGCTGG............................................................................................................................................................................................................. 26 1 3.00 3.00 - - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - 1.00
...........................................................................................................................................................................................................................................................TGTGTGAGGAAGAAGTCCTGGAGGTGG... 27 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.........TGTAACCGCCACGGATGCCGACAAGCT..................................................................................................................................................................................................................................................... 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................TGCTGTGTGAGGAAGAAGTCCTGGAGGT..... 28 1 2.00 2.00 - - - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................TGCTGTGTGAGGAAGAAGTCCTGGAa....... 26 a 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........TGTAACCGCCACGGATGCCGACAA........................................................................................................................................................................................................................................................ 24 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................TGCTGTGTGAGGAAGAAGTCCTGGA........ 25 1 2.00 2.00 - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
....TGACCTGTAACCGCCACGGATGCCGAC.......................................................................................................................................................................................................................................................... 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................TGTGTGAGGAAGAAGTCCTGGAGGTGttt. 29 ttt 2.00 1.00 - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
......ACCTGTAACCGCCACGGATGCCGACA......................................................................................................................................................................................................................................................... 26 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.......................................................................................................................................................................................................................................TGCCCAGATGGCTGGCCTGCTGTGTGA....................... 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........TGTAACCGCCACGGATGCCGACAAGCTTT................................................................................................................................................................................................................................................... 29 1 2.00 2.00 - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
....................................TTCCATGTCACCTGGTGAGATCTCAGA.......................................................................................................................................................................................................................... 27 1 2.00 2.00 - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................TGCCCAGATGGCTGGCCTGCTGTGTGAGG..................... 29 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................TGGCTGGCCTGCTGTGTGAGGAAGAAGTC............. 29 1 2.00 2.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................GATGGCTGGCCTGCTGTGTGAGGA.................... 24 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..CATGACCTGTAACCGCCACGGATGC.............................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................AGATGGCTGGCCTGCTGTGTGAGGAt................... 26 t 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................GTGAGATCTCAGAGCCCGGCTGCTGGGAG.......................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
...ATGACCTGTAACCGCCACGGATGCCGcc.......................................................................................................................................................................................................................................................... 28 cc 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.GCATGACCTGTAACCGCCACGGATG............................................................................................................................................................................................................................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................TAGGTCTTGGGTCCAGGAGGAAGGAGG.......................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..CATGACCTGTAACCGCCACGGATGCCG............................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................TGCACCCTTCTGACCCACTTCTC....................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
...........................................................................................................................................................................................................................................................TGTGTGAGGAAGAAGTCCTGGAGGTGGA.. 28 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.....................................................................................................................................................................AGGAAGGAGGTGGGGGGCTGCTGT............................................................................................ 24 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........TAACCGCCACGGATGCCGACAAGCTa.................................................................................................................................................................................................................................................... 26 a 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................TGCACCCTTCTGACCCACTTCTCCTCt................................................... 27 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
...........................................................................................................................................................................................................................................................TGTGTGAGGAAGAAGTCCTGGAGGT..... 25 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
......................................................................................................................................................................................................................................GTGCCCAGATGGCTGGCCTGCTGTGTG........................ 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................TGTGAGGAAGAAGTCCTGGAGGTGG... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................TGCCCAGATGGCTGGCCTGCTGTGT......................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...........................................................................................................................................................................................................TGCACCCTTCTGACCCACTTCTCt...................................................... 24 t 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
...................................................................................................................................................................................................................................................TGGCCTGCTGTGTGAGGAAGAAGTCCTG.......... 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...............................................CTGGTGAGATCTCAGAGCCCGGCTGCTG.............................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...........TAACCGCCACGGATGCCGACAAGCT..................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.GCATGACCTGTAACCGCCACGGATGCC............................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................AAGGAGGTGGGGGGCTGCTGT............................................................................................ 21 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................TGTTTGTGGCTGCACCCTTCTGACCC.............................................................. 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................................................TGCTGGGAGGTTCAAGGTGGCCACCGA........................................................................................................................................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....TGACCTGTAACCGCCACGGATGCCG............................................................................................................................................................................................................................................................ 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................CTGGCCTGCTGTGTGAGGAAGA................. 22 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
...........................................................................................................................................................................................................................................................TGTGTGAGGAAGAAGTCCTGGAGGTG.... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.........................................................................................................................................................................................................................................CCCAGATGGCTGGCCTGCTGTGTGA....................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................TGGCTGGCCTGCTGTGTGAGGAAGAAGT.............. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................TGTGTGAGGAAGAAGTCCTGGAGGggga.. 28 ggga 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...ATGACCTGTAACCGCCACGGATGCCGAC.......................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................................TGTCACCTGGTGAGATCTCAGAGC........................................................................................................................................................................................................................ 24 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................................................................................................AAGGAGGTGGGGGGCTGCTGTa........................................................................................... 22 a 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.........TGTAACCGCCACGGATGCCGACAAcc...................................................................................................................................................................................................................................................... 26 cc 1.00 2.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................TGTGAGGAAGAAGTCCTGGAGGTGGA.. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................TGGCTGGCCTGCTGTGTGAGGAAGAAG............... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................AAGGAGGTGGGGGGCTGCTGTGG.......................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.GCATGACCTGTAACCGCCACGGATGC.............................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
........................................................................................................................................................................AAGGAGGTGGGGGGCTGCTG............................................................................................. 20 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.........TGTAACCGCCACGGATGCCGACAAGaa..................................................................................................................................................................................................................................................... 27 aa 1.00 3.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................CTGCACCCTTCTGACCCACTTCTCCTC.................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................................AGATGGCTGGCCTGCTGTGTGAGGA.................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
......ACCTGTAACCGCCACGGATGCCGACAA........................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................TGTGTGAGGAAGAAGTCCTGGAGGTGt... 27 t 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................GTGAGATCTCAGAGCCCGGCTGCTG.............................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................TGGTGAGATCTCAGAGCCCGGCTGC................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..................................................GTGAGATCTCAGAGCCCGGCTGCTGGGAa.......................................................................................................................................................................................................... 29 a 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -

Antisense strand
TGCATGACCTGTAACCGCCACGGATGCCGACAAGCTTTCCATGTCACCTGGTGAGATCTCAGAGCCCGGCTGCTGGGAGGTTCAAGGTGGCCACCGAGTGGGAGCATCCTACCTCCTGTCTCGTGCGAGACGGCAGCCACGCCATGCTTAGGTCTTGGGTCCAGGAGGAAGGAGGTGGGGGGCTGCTGTGGTTTGTTTGTGGCTGCACCCTTCTGACCCACTTCTCCTCAGTGCCCAGATGGCTGGCCTGCTGTGTGAGGAAGAAGTCCTGGAGGTGGACA
...................................................((((.(((((((((...))).))))))..))))..((..((((...))))..))..((((((((((..(((.((((((((((((.........))))...))))))....)).)))..))))))))))......................................................................................................
..................................................51..............................................................................................................................179....................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
................GCCACGGATGCCGACAAGCTTTCCA................................................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................................................GGCAGCCACGCCATtgtt........................................................................................................................................ 18 tgtt 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -