chr11:97336353 97336687 +
(7)
OTHER.mut 		(4)
PIWI.ip 		(3)
PIWI.mut 		(29)
TESTES

Sense strand
CCAATCGGATAGAAGATTCCAGGGAGAGGATGAAGACGCTGCGGAAGCTGGTGAGGAAAGGAGGCACCAGCGGGCGGGAGGGGTAGCTGGGTAGCTTTCTCACAGAGGCTTCAAAGGGCTCTTTCCATCAAAAGCCTCAGTTTCCCCACCTGTACGAAGGAAGGGCATTGCAAGGTGGATTTTAGCTCCGTACAGTTGGATGATGGGAGTCCCTTTAGGGGATGTGGAGCCGGGATTGGAGAGATTGTCACAACCTGATCCCGTTTCCTTCCTCCTGTCCCCTAGATCCGGGATCTCCCAGGACACTACTATGAAACACTTAAATTCCTTGTGGG
.......................................................................................................................................................................................................................(((((((((.((((.(((((((((...............)))))))))........)))))))))))))...................................................
..................................................................................................................................................................................................................211.......................................................................285................................................
 Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		mjTestesWT1()
Testes Data. (testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR028731(GSM400968)
Mili-wt-associated. (testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR037901(GSM510437)
testes_rep2. (testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		GSM475281(GSM475281)
total RNA. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM475279(GSM475279)
Miwi-IP. (miwi testes) 		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGAT................................................................................................... 22 1 11.00 11.00 6.00 2.00 - - 1.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGAT................................................................................................... 21 1 10.00 10.00 4.00 3.00 - - 1.00 - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATTGG................................................................................................ 24 1 10.00 10.00 - 3.00 1.00 1.00 - - - 5.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATTGGA............................................................................................... 25 1 8.00 8.00 5.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATT.................................................................................................. 22 1 7.00 7.00 - 1.00 - 4.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TTTAGGGGATGTGGAGCCGGGAT................................................................................................... 23 1 6.00 6.00 - 3.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATaga................................................................................................ 24 aga 5.00 10.00 5.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATTGt................................................................................................ 24 t 5.00 3.00 - - - - 3.00 2.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TTTAGGGGATGTGGAGCCGGGATTGt................................................................................................ 26 t 5.00 0.00 5.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TTTAGGGGATGTGGAGCCGGGATT.................................................................................................. 24 1 4.00 4.00 4.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATaaa................................................................................................ 24 aaa 3.00 10.00 - - 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGATTGGAGAGAT.......................................................................................... 31 1 3.00 3.00 2.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGATT.................................................................................................. 23 1 3.00 3.00 - - - 2.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGA.................................................................................................... 21 1 3.00 3.00 - - - - - - 3.00 - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................AGGGGATGTGGAGCCGGGATTGG................................................................................................ 23 1 3.00 3.00 - - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATTG................................................................................................. 23 1 3.00 3.00 - - 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..AATCGGATAGAAGATTCCAGGGAGA.................................................................................................................................................................................................................................................................................................................... 25 1 3.00 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATTa................................................................................................. 23 a 2.00 7.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TTTAGGGGATGTGGAGCCGGGA.................................................................................................... 22 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGA.................................................................................................... 20 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGATa.................................................................................................. 23 a 2.00 11.00 - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGG..................................................................................................... 20 1 2.00 2.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATTGGt............................................................................................... 25 t 2.00 10.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATa.................................................................................................. 22 a 1.00 10.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.CAATCGGATAGAAGATTCCAGGGAGAGG.................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TTTAGGGGATGTGGAGCCGGG..................................................................................................... 21 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGaa.................................................................................................... 20 aa 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......GGATAGAAGATTCCAGGGAGAGGATGAA............................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................GAGAGGATGAAGACGCTGCGGAAGCT.............................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGAa................................................................................................... 21 a 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATTcga............................................................................................... 25 cga 1.00 7.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................TCCCTTTAGGGGATGTGGAGCCGGGA.................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................GAGAGGATGAAGACGCTGCGGAAGCTGa............................................................................................................................................................................................................................................................................................ 28 a 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGAag.................................................................................................. 23 ag 1.00 3.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................AGAGGATGAAGACGCTGCGGAAGCTG............................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
....TCGGATAGAAGATTCCAGGGAGAGGATGA.............................................................................................................................................................................................................................................................................................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATaat................................................................................................ 24 aat 1.00 10.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................GATCCCGTTTCCTTCCTCCTGT......................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
....TCGGATAGAAGATTCCAGGGAGAGGA................................................................................................................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGATTG................................................................................................. 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................AGAGGATGAAGACGCTGCGG................................................................................................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
........................AGAGGATGAAGACGCTGCGGAAGCTGt............................................................................................................................................................................................................................................................................................ 27 t 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................GGAGAGGATGAAGACGCTGCGGAAGC............................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...ATCGGATAGAAGATTCCAGGGAG..................................................................................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATTGtat.............................................................................................. 26 tat 1.00 3.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGa..................................................................................................... 19 a 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGAagt................................................................................................. 24 agt 1.00 3.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................TTCCAGGGAGAGGATGAAGACGCTGt..................................................................................................................................................................................................................................................................................................... 26 t 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGGATTGGAGA............................................................................................. 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................GGAGGCACCAGCGGGCccc................................................................................................................................................................................................................................................................. 19 ccc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
........................................................................................................................................................................................................................................................................TTCCTTCCTCCTGTCCCCTAGt................................................. 22 t 1.00 0.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGAa................................................................................................... 22 a 1.00 3.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................GATCCCGTTTCCTTCCTCCTGTC........................................................ 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
..............................TGAAGACGCTGCGGAAGCTGatc.......................................................................................................................................................................................................................................................................................... 23 atc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.........................................................................................................................................................................................................................GGGGATGTGGAGCga....................................................................................................... 15 ga 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGATTGGAGAG............................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
.......................................................................................................................................................................................................................TAGGGGATGTGGAGCCGGaaa................................................................................................... 21 aaa 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................CTTTAGGGGATGTGGAGCCGGGATa.................................................................................................. 25 a 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
................................AAGACGCTGCGGAAGCT.............................................................................................................................................................................................................................................................................................. 17 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGATTGGAGcgat.......................................................................................... 31 cgat 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................TTAGGGGATGTGGAGCCGGGATTGa................................................................................................ 25 a 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................AGGATGAAGACGCTGCGGAAGCTGatc.......................................................................................................................................................................................................................................................................................... 27 atc 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -

Antisense strand
CCAATCGGATAGAAGATTCCAGGGAGAGGATGAAGACGCTGCGGAAGCTGGTGAGGAAAGGAGGCACCAGCGGGCGGGAGGGGTAGCTGGGTAGCTTTCTCACAGAGGCTTCAAAGGGCTCTTTCCATCAAAAGCCTCAGTTTCCCCACCTGTACGAAGGAAGGGCATTGCAAGGTGGATTTTAGCTCCGTACAGTTGGATGATGGGAGTCCCTTTAGGGGATGTGGAGCCGGGATTGGAGAGATTGTCACAACCTGATCCCGTTTCCTTCCTCCTGTCCCCTAGATCCGGGATCTCCCAGGACACTACTATGAAACACTTAAATTCCTTGTGGG
.......................................................................................................................................................................................................................(((((((((.((((.(((((((((...............)))))))))........)))))))))))))...................................................
..................................................................................................................................................................................................................211.......................................................................285................................................
 Size Perfect hit Total Norm Perfect Norm mjTestesWT4()
Testes Data. (testes) 		mjTestesKO8()
Testes Data. (Zcchc11 testes) 		mjTestesKO6()
Testes Data. (Zcchc11 testes) 		mjTestesKO7()
Testes Data. (Zcchc11 testes) 		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes) 		mjTestesKO5()
Testes Data. (Zcchc11 testes) 		mjTestesWT1()
Testes Data. (testes) 		mjTestesWT2()
Testes Data. (testes) 		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes) 		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes) 		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes) 		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes) 		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes) 		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes) 		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes) 		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes) 		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes) 		SRR028731(GSM400968)
Mili-wt-associated. (testes) 		mjTestesWT3()
Testes Data. (testes) 		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes) 		SRR014235(GSM319959)
2 dpp total. (testes) 		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes) 		SRR037901(GSM510437)
testes_rep2. (testes) 		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes) 		GSM475281(GSM475281)
total RNA. (testes) 		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes) 		GSM475279(GSM475279)
Miwi-IP. (miwi testes) 		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
................................................................................................................................................................................................................................TGGAGCCGGGATTGGAGAGATTGTCACA................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................TCCGGGATCTCCCaga.................................... 16 aga 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................GCTCTTTCCATCAAaggc............................................................................................................................................................................................................ 18 aggc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -