(1)
OTHER.ip
(3)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(32)
TESTES

Sense strand
TCTATATATTAACAACTGTTAAGTGCTTTATAAAACCAAAGACTTGACGTTATAAACATGATTCCTGAAATTCTTAACTTAATGTTACTACATCTGTCAGATTCCAAAGCTAGAATTTGACAAATTATGAAGCCAAGAGACATTGAAGAACATCTTAATTCCTTATTATTTATTCCTCTGTGAATGCTTTCCCCTTTTAGATTTTGCAGAGGCTGTAAAATCGATTGTGGAGAAGACAGAGCTTTCATTG
.........................................................................................................(((((......((.(((....(((((...(((.((.(((((........))))))))))....))))).....))).)).)))))............................................................
....................................................................................................101................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR363963(GSM822765)
AdultGlobal 5'-RACEread_length: 105. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR037898(GSM510434)
ovary_rep3. (ovary)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
.....................................................................................................TTCCAAAGCTAGAATTTGACAAATTATGAAGCCAAGAGACATTGAAGAACAT................................................................................................. 52 1 44.00 44.00 44.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGTAAAATCGATTGTGGAGAAGACAGA.......... 27 1 14.00 14.00 - 2.00 3.00 3.00 2.00 1.00 - - - - - - - - - - 1.00 1.00 - 1.00 - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGTAAAATCGATTGTGGAGAAGACAG........... 26 1 10.00 10.00 - 2.00 2.00 - - 1.00 1.00 - - - 1.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - 1.00 - -
.......................................................................................................................................................................................................................TAAAATCGATTGTGGAGAAGACAGAGC........ 27 1 9.00 9.00 - 1.00 1.00 4.00 - - 1.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGTAAAATCGATTGTGGAGAAGACAGAGC........ 29 1 9.00 9.00 - 1.00 2.00 1.00 - - - - - - - - 1.00 - 1.00 - - 1.00 - - - - - - - - 1.00 1.00 - - - - -
.....................................................................................................................................................................................................................TGTAAAATCGATTGTGGAGAAGACAGt.......... 27 t 7.00 10.00 - 1.00 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGTAAAATCGATTGTGGAGAAGACA............ 25 1 5.00 5.00 - - - - 1.00 1.00 - - 1.00 - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAAAATCGATTGTGGAGAAGACAGAG......... 26 1 5.00 5.00 - 1.00 - - 1.00 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................TCGATTGTGGAGAAGACAGAGC........ 22 1 4.00 4.00 - - - - - - - - - 4.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................CGATTGTGGAGAAGACAGAGCTTTCA... 26 1 3.00 3.00 - 1.00 - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAAAATCGATTGTGGAGAAGACAGAGCT....... 28 1 3.00 3.00 - 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAAAATCGATTGTGGAGAAGACAGAGCa....... 28 a 3.00 9.00 - 1.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................AAAATCGATTGTGGAGAAGACAGAGCT....... 27 1 3.00 3.00 - 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGTAAAATCGATTGTGGAGAAGACAGAG......... 28 1 3.00 3.00 - 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.......................................................................................................................................................................................................................TAAAATCGATTGTGGAGAAGACAGAGCTT...... 29 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................AATCGATTGTGGAGAAGACA............ 20 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................AAAATCGATTGTGGAGAAGACAGAGCTTT..... 29 1 2.00 2.00 - - - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - -
.................................................................................................................................................................................................................AGGCTGTAAAATCGATTGTGGA................... 22 1 2.00 2.00 - - - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGTAAAATCGATTGTGGAGAAGACAGAGCT....... 30 1 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - 1.00 1.00 - - - - - - - - - -
........................................................................................................................................................................................................................AAAATCGATTGTGGAGAAGACAGAGC........ 26 1 2.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................GTAAAATCGATTGTGGAGAAGACAGA.......... 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................AGGCTGTAAAATCGATTGTGGAGAAGA.............. 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................CGATTGTGGAGAAGACAGAGCTTTCAT.. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................AGGCTGTAAAATCGATTGTGGAGAAGAC............. 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................CGATTGTGGAGAAGACAGAGCTTTCATTG 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.....................................................................................................................................................................................................................TGTAAAATCGATTGTGGAGAAG............... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
...........................................................................................................................................................................................................................ATCGATTGTGGAGAAGACAGAGCTTT..... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................AAATCGATTGTGGAGAAGAC............. 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
..........................................................................................................................................................................................................................AATCGATTGTGGAGAAGACAGAGCTT...... 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................TTGCAGAGGCTGTAAAATCGATTGTGGA................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................ATCGATTGTGGAGAAGACAGAGCTT...... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................AGAGGCTGTAAAATCGATTGTG..................... 22 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................TGCAGAGGCTGTAAAATCGATTGTGGt................... 27 t 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................GTAAAATCGATTGTGGAGAAGACAGAG......... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAAAATCGATTGTGGAGAAGACAGA.......... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................GGAGAAGACAGAGCTTTCAT.. 20 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAAAATCGATTGTGGAGAAGACAGAGt........ 27 t 1.00 5.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGTAAAATCGATTGTGGAGAAGAaag........... 26 aag 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TTTTGCAGAGGCTGTAAAATCGA.......................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.......................................................................................................................................................................................................................TAAAATCGATTGTGGAGAAGACAGAGCTTT..... 30 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGTAAAATCGATTGTGGAGAAGACAGtt......... 28 tt 1.00 10.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................CGATTGTGGAGAAGACAGAGCT....... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.........................................................................................................................................................................................................................AAATCGATTGTGGAGAAGACAG........... 22 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................GTAAAATCGATTGTGGAGAAGACAGAGC........ 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.........................................................................................................................................................................................................................AAATCGATTGTGGAGAAGACAGAGC........ 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................TCGATTGTGGAGAAGACAGAGCTT...... 24 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................GGAGAAGACAGAGCTTTCATTG 22 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................AGGCTGTAAAATCGATTGTGGAGAA................ 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................AAATCGATTGTGGAGAAGACAGAGCT....... 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................TGTAAAATCGATTGTGGAGAAGACAGAGCTa...... 31 a 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.......................................................................................................................................................................................................................TAAAATCGATTGTGGAGAAGACAGcg......... 26 cg 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TAAAATCGATTGTGGAGAAGACAGAGCTg...... 29 g 1.00 3.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................TTTTGCAGAGGCTGTAA................................ 17 4 0.25 0.25 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.25

Antisense strand
TCTATATATTAACAACTGTTAAGTGCTTTATAAAACCAAAGACTTGACGTTATAAACATGATTCCTGAAATTCTTAACTTAATGTTACTACATCTGTCAGATTCCAAAGCTAGAATTTGACAAATTATGAAGCCAAGAGACATTGAAGAACATCTTAATTCCTTATTATTTATTCCTCTGTGAATGCTTTCCCCTTTTAGATTTTGCAGAGGCTGTAAAATCGATTGTGGAGAAGACAGAGCTTTCATTG
.........................................................................................................(((((......((.(((....(((((...(((.((.(((((........))))))))))....))))).....))).)).)))))............................................................
....................................................................................................101................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR363963(GSM822765)
AdultGlobal 5'-RACEread_length: 105. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT1()
Testes Data. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR037898(GSM510434)
ovary_rep3. (ovary)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)