| Gene: Myohd1 | ID: uc007krb.1_intron_7_0_chr11_84708867_f.5p | SPECIES: mm9 |
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(2) OTHER.mut |
(6) PIWI.ip |
(1) PIWI.mut |
(13) TESTES |
| TGAGGGAACTGCCTTCTCCTGGCTACCCAATCCAGAAAGCAGTTTGGAAGGTAGGAGGAGCCTTCCCAGACTGCCCGAAAGCCCTACCCATTCTGCCTAGGGCCTGTCTCCTGTCCCCCACTCACCCTGCTGACCACTGGGCTGTGACATGGATTCTTTTCAGAGGATTGTTTCGAGGTGACCAGAGAGGCCATGCTCCATTTGGGCATCGACACCCCCACCCAGAACAACATCTTTAAGGTCAGAAGAA ..................................................(((((..(((........(((.....((..((((((..((...))..))))))...))....))).....)))..)))))......(((((((.(((....(((((((....)))))))...))).)))..))))................................................................. ..................................................51......................................................................................................................................187............................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................TCCAGAAAGCAGTTTGGAAGGTAGGAG................................................................................................................................................................................................. | 27 | 1 | 11.00 | 11.00 | 4.00 | 5.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - |
| ..............................TCCAGAAAGCAGTTTGGAAGGTAGGA.................................................................................................................................................................................................. | 26 | 1 | 5.00 | 5.00 | 2.00 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................TTTCAGAGGATTGTTTCGAGGTGACC................................................................... | 26 | 1 | 4.00 | 4.00 | - | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TGGGCTGTGACATGGATTCTTTTCAGA...................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - |
| ...............................................................................................................................................................TCAGAGGATTGTTTCGAGGTGACCAGA................................................................ | 27 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................TTCTTTTCAGAGGATTGTTTCGAGGT....................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................TCGACACCCCCACCCAGAACAACATCTTTAA........... | 31 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - |
| .........................................................................................................................................................TTCTTTTCAGAGGATTGTTTCGAGG........................................................................ | 25 | 1 | 2.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................TGACATGGATTCTTTTCAGAGGATTGT............................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..............................................................................................................................................TGTGACATGGATTCTTTTCAGAGGATT................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..................................................GTAGGAGGAGCCTTCCCAGACTGC................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .......................................................................................................................................................GATTCTTTTCAGAGGATTGTTTCGA.......................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................TCAGAGGATTGTTTCGAGGTGACCAG................................................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................TGTGACATGGATTCTTTTCAGAGGAT.................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ............................................................................................................................................................TTTTCAGAGGATTGTTTCGAGGTGA..................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............................TCCAGAAAGCAGTTTGGAAGGTAGG................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................ATCCAGAAAGCAGTTTGGAAGGTAGG................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...................................................................................................................................................CATGGATTCTTTTCAGAGaa................................................................................... | 20 | aa | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TGGGCTGTGACATGGATTCTTTTCAGAGG.................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .....................GCTACCCAATCCAGAAAGCAGTTTGGAAG........................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...............................................................................................................................................................TCAGAGGATTGTTTCGAGGTGACCAGAG............................................................... | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| TGAGGGAACTGCCTTCTCCTGGCTACCCAATCCAGAAAGCAGTTTGGAAGGTAGGAGGAGCCTTCCCAGACTGCCCGAAAGCCCTACCCATTCTGCCTAGGGCCTGTCTCCTGTCCCCCACTCACCCTGCTGACCACTGGGCTGTGACATGGATTCTTTTCAGAGGATTGTTTCGAGGTGACCAGAGAGGCCATGCTCCATTTGGGCATCGACACCCCCACCCAGAACAACATCTTTAAGGTCAGAAGAA ..................................................(((((..(((........(((.....((..((((((..((...))..))))))...))....))).....)))..)))))......(((((((.(((....(((((((....)))))))...))).)))..))))................................................................. ..................................................51......................................................................................................................................187............................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM179088(GSM179088) Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................AGTTTGGAAGGTAGGAGc................................................................................................................................................................................................. | 18 | c | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| GGGAACTGCCTTCTctgt......................................................................................................................................................................................................................................... | 18 | ctgt | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |