(4)
OTHER.mut
(6)
PIWI.ip
(3)
PIWI.mut
(1)
TDRD1.ip
(29)
TESTES

Sense strand
GTAATGTCGCAAGGTGGCCGTTACTGATCTTACTTCATCAAGTCTAATAGGTTTGGAGATTAAACCTTTTCTCAACTTGTGCTGTTTATATAGACAAGCTTCCGTCATTAAGGCTTCATTGTGACTTTTAACAAACATAATCTTCCCACATACCAGGAACTATTGGACATTTATTTGACATGGGAGAAATTATTTGGAATAATAAAACAGGAACTTTTCCTGAAGTTGCAATTTATACTGTATGGCTTCTTTTTCATGTTTCATCTAGGTTTTTAGAAGTGAAGTATAGTAAATTTGGTTCGTTAAATTGTGAAGGCG
.......................................................................................................(((((............)))))......((((.....((.(((((....((((......)))).((......))...))))))).....))))..........................................................................................................................
.....................................................................................................102....................................................................................................205...............................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM475281(GSM475281)
total RNA. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR037902(GSM510438)
testes_rep3. (testes)
..................................................................................................................................................................................................................................................................................................AAATTTGGTTCGTTAAATTGTGAAGGC. 27 1 6.00 6.00 - - 1.00 - - - - 1.00 1.00 1.00 - - - - - - - 1.00 - - - - - - - 1.00 - - -
...................................................................................................................................................................................................................................................................................................AATTTGGTTCGTTAAATTGTGAAGGCG 27 1 5.00 5.00 1.00 - - - - 1.00 - 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................AATTTGGTTCGTTAAATTGTGAAGGC. 26 1 5.00 5.00 1.00 - - - 1.00 - - - - - - 2.00 1.00 - - - - - - - - - - - - - - - -
.............................................................................................................................................................................TTTGACATGGGAGAAATTATTTGGAATA..................................................................................................................... 28 1 4.00 4.00 1.00 1.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................TTTGACATGGGAGAAATTATTTGGAA....................................................................................................................... 26 1 4.00 4.00 3.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TTGGACATTTATTTGACATGGGAGAA.................................................................................................................................. 26 1 3.00 3.00 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................TTTGACATGGGAGAAATTATTTGGAAT...................................................................................................................... 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........AGGTGGCCGTTACTGATCTTACTTCATC....................................................................................................................................................................................................................................................................................... 28 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.................................................................................................................................................................................................................................................................................................TAAATTTGGTTCGTTAAATTGTGAAGGC. 28 1 2.00 2.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................ATGGCTTCTTTTTCctgt........................................................... 18 ctgt 2.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
..................................................................................................................................................................................................................................................................................................AAATTTGGTTCGTTAAATTGTGAAGGt. 27 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................................................................................GTAAATTTGGTTCGTTAAATTGTGAAGGCGt 31 t 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...........AGGTGGCCGTTACTGATCTTACTTCATCt...................................................................................................................................................................................................................................................................................... 29 t 1.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................AATTTGGTTCGTTAAATTGTGAAGGCGcttt 31 cttt 1.00 5.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................TAGGTTTTTAGAAGTGAAGTATAGTAt.......................... 27 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....GTCGCAAGGTGGCCGTTACTGATC................................................................................................................................................................................................................................................................................................. 24 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................TTTTTAGAAGTGAAGTATAGTAAATTTGGT................... 30 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................TAGGTTTTTAGAAGTGAAGTATAGTAAt......................... 28 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................AGTCTAATAGGTTTGGAGATTAAA.............................................................................................................................................................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................GAAGTTGCAATTTATACTGTATGGCTT...................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................AATTTGGTTCGTTAAATTGTGAAGGCGt 28 t 1.00 5.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................AATTTATACTGTATGGCTTCTTTTTC............................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
............................................................................................................................................................................................................................TGAAGTTGCAATTTATACTGTATGGCT....................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................AAATTTGGTTCGTTAAATTGTGAAGGCt 28 t 1.00 6.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
...................................................................................................................................................................................................................................GCAATTTATACTGTATGGCT....................................................................... 20 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................TTTATACTGTATGGgggt..................................................................... 18 gggt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
........................................................................................................................................................................................................................................................................CTAGGTTTTTAGAAGTGA.................................... 18 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
....TGTCGCAAGGTGGCCGTTACTGATCT................................................................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
......................................................................................................................................................................................................................................................................................................TTGGTTCGTTAAATTGTGAA.... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.....................................................................................................................................................ATACCAGGAACTATTGGACATTT.................................................................................................................................................. 23 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........AGGTGGCCGTTACTGATCTTACTT........................................................................................................................................................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................................................................................ATTTGGTTCGTTAAATTGTGAAGGCGt 27 t 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................AAATTTGGTTCGTTAAATTGTGAAGGCG 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.TAATGTCGCAAGGTGGCCGTTACTGATCTTAC............................................................................................................................................................................................................................................................................................. 32 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...................................CATCAAGTCTAATAGGTTTGGAGAT.................................................................................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..........................................................................................................ATTAAGGCTTCATTGTGACTTTTAACAAAC...................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................TGTGACTTTTAACAAACATAATCTTCC............................................................................................................................................................................ 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................GGAACTATTGGACATTTATTTGACATG........................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................................................................................TAGTAAATTTGGTTCGTTAAATTGTG...... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
...............................................................................................................................................................................TGACATGGGAGAAATTATTTGGAATAATAAA................................................................................................................ 31 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................ACTATTGGACATTTATTTGACATGGGAGA................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.........................................GTCTAATAGGTTTGGAGA................................................................................................................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........................GATCTTACTTCATCAAGTCTAATAGGTT......................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................................................................................................GAAGTATAGTAAATTTGGTTCGTTA............. 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..AATGTCGCAAGGTGGCCGTTACTGATC................................................................................................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................................................................................AATTTGGTTCGTTAAATTGTGAAGGCGctt 30 ctt 1.00 5.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TTGGACATTTATTTGACATGGGAGAAA................................................................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................ATTGGACATTTATTTGACATGGGAGAAg................................................................................................................................. 28 g 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................CATTGTGACTTTTAAttc........................................................................................................................................................................................ 18 ttc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
..................................................................................................................................................................................................................................................................................AGAAGTGAAGTATAGTAAATTTGGTTC................. 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................CAATTTATACTGTATGGCTTC..................................................................... 21 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TTGGACATTTATTTGACATGGGAGAAATTA.............................................................................................................................. 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........AGGTGGCCGTTACTGATCTTACTTCA......................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................TGGACATTTATTTGACATGGGAGAAATT............................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................TAATAGGTTTGGAGATTAAA.............................................................................................................................................................................................................................................................. 20 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..AATGTCGCAAGGTGGCCGT......................................................................................................................................................................................................................................................................................................... 19 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................................................TGAAGTTGCAATTTATAC................................................................................ 18 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................CACATACCAGGAACTATTGGACATTTA................................................................................................................................................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................TCCTGAAGTTGCAATTTATACTGTATG.......................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................................................................................................................................................................................................TAATAAAACAGGAACTTTTCCTGAAGTT........................................................................................... 28 2 0.50 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
GTAATGTCGCAAGGTGGCCGTTACTGATCTTACTTCATCAAGTCTAATAGGTTTGGAGATTAAACCTTTTCTCAACTTGTGCTGTTTATATAGACAAGCTTCCGTCATTAAGGCTTCATTGTGACTTTTAACAAACATAATCTTCCCACATACCAGGAACTATTGGACATTTATTTGACATGGGAGAAATTATTTGGAATAATAAAACAGGAACTTTTCCTGAAGTTGCAATTTATACTGTATGGCTTCTTTTTCATGTTTCATCTAGGTTTTTAGAAGTGAAGTATAGTAAATTTGGTTCGTTAAATTGTGAAGGCG
.......................................................................................................(((((............)))))......((((.....((.(((((....((((......)))).((......))...))))))).....))))..........................................................................................................................
.....................................................................................................102....................................................................................................205...............................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM475281(GSM475281)
total RNA. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR037902(GSM510438)
testes_rep3. (testes)