(1)
OTHER.ip
(3)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(27)
TESTES

Sense strand
GGCTGCCCTTGAACTCAGAGATCCTCCTGCTTCTGCCTCCCCAGTGCTGGGATTAAAGGTGTGCACAACTACAACCAGCTCTACACTCCTCTTAAAGACAATTCTCTGTGATAATATGGTCTGTGTGCAAGTCTGTATAACTGCACAAGCTTGGGTATTAACTGTCAAGGAGAACATTATAAGTCAAGTTTCCCTTTTAGGGAGGAGATGGTTTCCAGTCCCAGAGTACTCATCCCTGCCTCCAGTCCTA
..........................................((.(((((........((....))........))))).))..............((((........(((((....(((...(((((.(((.......)))))))).)))....)))))..))))....................................................................................
..........................................43...........................................................................................................................168................................................................................
Size Perfect hit Total Norm Perfect Norm SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
...............................................TGGGATTAAAGGTGTGCACAACTACAAC............................................................................................................................................................................... 28 1 7.00 7.00 1.00 1.00 - - - 1.00 - - - - - - 1.00 - - - 1.00 1.00 - - - - - 1.00 - - -
...............................................TGGGATTAAAGGTGTGCACAACTACAACC.............................................................................................................................................................................. 29 1 7.00 7.00 3.00 - - 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 -
...............................................TGGGATTAAAGGTGTGCACAACTACAA................................................................................................................................................................................ 27 1 7.00 7.00 - 1.00 1.00 1.00 2.00 - - - - - 1.00 - - - - - - - - - - 1.00 - - - - -
..........................................................................................................TGTGATAATATGGTCTGTGTGCAAGTC..................................................................................................................... 27 1 4.00 4.00 1.00 - - - - - - - - 3.00 - - - - - - - - - - - - - - - - -
.........................................................................................................................................TAACTGCACAAGCTTGGGTATTAACTG...................................................................................... 27 1 3.00 3.00 1.00 - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
...............................................TGGGATTAAAGGTGTGCACAACTACAAa............................................................................................................................................................................... 28 a 2.00 7.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.........TGAACTCAGAGATCCTCCTGCTTgtgt...................................................................................................................................................................................................................... 27 gtgt 2.00 0.00 - 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
....................................................................................................................TGGTCTGTGTGCAAGTCTGTATAACTGC.......................................................................................................... 28 1 2.00 2.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................TGTATAACTGCACAAGCTTGGGTATTA.......................................................................................... 27 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................TTAAAGACAATTCTCTGTGATA......................................................................................................................................... 22 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........TGAACTCAGAGATCCTCCTGCTTgtga...................................................................................................................................................................................................................... 27 gtga 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................TAACTGTCAAGGAGAACATTATAAGTCAAG.............................................................. 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.........................................................................................................................................TAACTGCACAAGCTTGGGTATTAACTGT..................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................TGGGTATTAACTGTCAAGGAGAACATTA....................................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
................................................................................................................................AAGTCTGTATAACTGCACAAGCTTGGGT.............................................................................................. 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......CTTGAACTCAGAGATCCTCCTttca.......................................................................................................................................................................................................................... 25 ttca 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................TCCTCTTAAAGACAATTCTCTGTGATAA........................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.................................................................................................................................................................................TATAAGTCAAGTTTCCCTTTTAGGGAGGAG........................................... 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................GCTGGGATTAAAGGTGTGCACAACTct.................................................................................................................................................................................. 27 ct 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...............................................TGGGATTAAAGGTGTGCACAACTACA................................................................................................................................................................................. 26 2 1.00 1.00 - - 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - -
........TTGAACTCAGAGATCCTCCTGCTTgtat...................................................................................................................................................................................................................... 28 gtat 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........TGAACTCAGAGATCCTCCTGCTTgtt....................................................................................................................................................................................................................... 26 gtt 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................................................................................................GTCTGTATAACTGCACAAGCTTGGGTA............................................................................................. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
........TTGAACTCAGAGATCCTCCTGCTTgtgt...................................................................................................................................................................................................................... 28 gtgt 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
........TTGAACTCAGAGATCCTCCTGCTTgc........................................................................................................................................................................................................................ 26 gc 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.........TGAACTCAGAGATCCTCata............................................................................................................................................................................................................................. 20 ata 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................GAGTACTCATCCCTGCCTCCAGTC... 24 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................CCTTTTAGGGAGGAGATGG....................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
...................................................................................................................................TCTGTATAACTGCACAAGCTTGGGTATT........................................................................................... 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................TACAACCAGCTCTACACTCCTCTTAAA.......................................................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TTAACTGTCAAGGAGAACATTATAAGT.................................................................. 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................................TGGGATTAAAGGTGTGCACAACTAaa................................................................................................................................................................................. 26 aa 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
............................................................................................TAAAGACAATTCTCTGTGATAATATGGTC................................................................................................................................. 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...........................................................................................TTAAAGACAATTCTCTGTGATAATATGGT.................................................................................................................................. 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................TACACTCCTCTTAAAGACAATTCTCTGT............................................................................................................................................. 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........TGAACTCAGAGATCCTtat.............................................................................................................................................................................................................................. 19 tat 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...............................................TGGGATTAAAGGTGTGCACAACTACAACCAGC........................................................................................................................................................................... 32 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................TGGGATTAAAGGTGTGCACAACTACAACCA............................................................................................................................................................................. 30 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................TATGGTCTGTGTGCAAGTCTGTATAACTGC.......................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.........TGAACTCAGAGATCCTCCTGCTTtata...................................................................................................................................................................................................................... 27 tata 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........TGAACTCAGAGATCCTttc.............................................................................................................................................................................................................................. 19 ttc 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.................................................................................................................................................................................TATAAGTCAAGTTTCCCTTTTAGGGAGGAGA.......................................... 31 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................CCAGTGCTGGGATTAAAGGTGTGCACtaa..................................................................................................................................................................................... 29 taa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.........TGAACTCAGAGATCCTCCTata........................................................................................................................................................................................................................... 22 ata 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TAATATGGTCTGTGTGCAAGTCTGTA................................................................................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........TGAACTCAGAGATCCTCCTGCTTtt........................................................................................................................................................................................................................ 25 tt 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.........TGAACTCAGAGATCCTCCTGCgtgt........................................................................................................................................................................................................................ 25 gtgt 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................................................................................................................TGGGTATTAACTGTCAAGGAGAACAT......................................................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
........TTGAACTCAGAGATCCTCCTGCTTCTGC...................................................................................................................................................................................................................... 28 11 0.27 0.27 - - - - - - - - - - - - - - 0.27 - - - - - - - - - - - -
...............................................TGGGATTAAAGGTGTGCACAACTAC.................................................................................................................................................................................. 25 4 0.25 0.25 - - 0.25 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................GCTGGGATTAAAGGTGTGCACAACTAC.................................................................................................................................................................................. 27 4 0.25 0.25 - - - - 0.25 - - - - - - - - - - - - - - - - - - - - - -
.......CTTGAACTCAGAGATCCTCCTGCTT.......................................................................................................................................................................................................................... 25 13 0.23 0.23 - - - - - 0.08 - - 0.08 - - - - - - 0.08 - - - - - - - - - - -
..............................................CTGGGATTAAAGGTGTGCACAACTA................................................................................................................................................................................... 25 7 0.14 0.14 - - - - - - - - - - - - - - - 0.14 - - - - - - - - - - -
.......CTTGAACTCAGAGATCCTCCTGCTTCa........................................................................................................................................................................................................................ 27 a 0.08 0.08 - - - - - - - - 0.08 - - - - - - - - - - - - - - - - - -
.......CTTGAACTCAGAGATCCTCCTGCTTC......................................................................................................................................................................................................................... 26 12 0.08 0.08 - - - - - - - - 0.08 - - - - - - - - - - - - - - - - - -
.........TGAACTCAGAGATCCTCCTGCTTC......................................................................................................................................................................................................................... 24 16 0.06 0.06 - - - - - - - - 0.06 - - - - - - - - - - - - - - - - - -

Antisense strand
GGCTGCCCTTGAACTCAGAGATCCTCCTGCTTCTGCCTCCCCAGTGCTGGGATTAAAGGTGTGCACAACTACAACCAGCTCTACACTCCTCTTAAAGACAATTCTCTGTGATAATATGGTCTGTGTGCAAGTCTGTATAACTGCACAAGCTTGGGTATTAACTGTCAAGGAGAACATTATAAGTCAAGTTTCCCTTTTAGGGAGGAGATGGTTTCCAGTCCCAGAGTACTCATCCCTGCCTCCAGTCCTA
..........................................((.(((((........((....))........))))).))..............((((........(((((....(((...(((((.(((.......)))))))).)))....)))))..))))....................................................................................
..........................................43...........................................................................................................................168................................................................................
Size Perfect hit Total Norm Perfect Norm SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
..............................CTGCCTCCCCAGTGCTGGGATTAAAtt................................................................................................................................................................................................. 27 tt 2.00 0.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................TGCCTCCCCAGTGCTGGGATTAAtta.................................................................................................................................................................................................. 26 tta 2.00 0.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................CTGCCTCCCCAGTGCTGGGATTAttta................................................................................................................................................................................................... 27 ttta 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............................TCTGCCTCCCCAGTGCTGGGATTAAAcc................................................................................................................................................................................................. 28 cc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................CTGCCTCCCCAGTGCTGGGATTAAAta................................................................................................................................................................................................. 27 ta 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................CTGCCTCCCCAGTGCTGGGATTAAAcgcc................................................................................................................................................................................................. 29 cgcc 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.............................CTGCCTCCCCAGTGCTGGGATTAtaa................................................................................................................................................................................................... 26 taa 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................TGCCTCCCCAGTGCTGGGATTAAAaaaa................................................................................................................................................................................................. 28 aaaa 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................TGCCTCCCCAGTGCTGGGATTAcaaa................................................................................................................................................................................................... 26 caaa 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................CTGCTTCTGCCTCCCCAGTGCTGGGATTAct................................................................................................................................................................................................... 31 ct 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.............................CTGCCTCCCCAGTGCTGGGATTAAttt.................................................................................................................................................................................................. 27 ttt 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................TGCCTCCCCAGTGCTGGGATTAAAtc................................................................................................................................................................................................. 26 tc 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
..............................GCCTCCCCAGTGCTGGGATTAAAcgta................................................................................................................................................................................................. 27 cgta 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......CCTTGAACTCAGAGATCCTCCTGCTTCTG....................................................................................................................................................................................................................... 29 10 0.10 0.10 - - - - - - - - - - - - - - - - - - - - - - - - - - 0.10