| Gene: Pps | ID: uc007kek.1_intron_8_0_chr11_75460426_f | SPECIES: mm9 |
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(3) OTHER.mut |
(1) OVARY |
(4) PIWI.ip |
(3) PIWI.mut |
(25) TESTES |
| CCACCCCAGAGTTCCTCAGCAGCTCCTGGGACTGGATCGGACTATACAAGGTGATACAGCAGGCAAGGCAGGGAGTCCATTATCCCCTGGTTTGTCCATCACTGGGGCACACAGGAGCTGGCCAGAGACAACTGAAGAGCTTACCCCTGTTCACCCCAGGGACCCTGTCCAACTTAGGGCCCGTCAGCAAAGAGAAGACTTAGTGTTAAGACCAGCCCTGGCAATAAGATCTGCCCCTTACAGATCTTCTCCTTAGGATCTTTCTGTAGCTCTCATACCCTCTTCACCCACTGACTGCCTGCCTGATTCCCACTCACAGGTGGGGATGCGTCACATTAATGACTATGTAGCCTATGTCTGGGTCGGCGA ...........................................................................................................................................................................................................................((((..((((((((.......)))))))).................((((.((....................)))))).)))).................................................................. ...........................................................................................................................................................................................................................220................................................................................................319................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR037900(GSM510436) testes_rep1. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR037898(GSM510434) ovary_rep3. (ovary) | SRR037901(GSM510437) testes_rep2. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................................................................................TACAGATCTTCTCCTTAGGATCTTTCTGTAGCTCTCATACCCTCTTCACCCA............................................................................... | 52 | 1 | 21.00 | 21.00 | 21.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGGGACTGGATCGGACTATACAAGGT............................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 4.00 | 4.00 | - | - | 1.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..........................TGGGACTGGATCGGACTATACAAGGTG............................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 3.00 | 3.00 | - | - | - | - | 1.00 | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................GGGACTGGATCGGACTATACA................................................................................................................................................................................................................................................................................................................................. | 21 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................TGACTATGTAGCCTATGTCTGGGTCG.... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ........................CCTGGGACTGGATCGGACTATACAAGGT............................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................ACTGGATCGGACTATACAAGGT............................................................................................................................................................................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......................TCCTGGGACTGGATCGGACTATACAAGG.............................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................CGGACTATACAAGGTGg........................................................................................................................................................................................................................................................................................................................... | 17 | g | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................AGCTCCTGGGACTGGATCGGACTATAC.................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................CCTGGGACTGGATCGGACTATACAAGGTGg........................................................................................................................................................................................................................................................................................................................... | 30 | g | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................TGGATCGGACTATACAAGGTGATACAGCA.................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................TGACTATGTAGCCTATGTCTGGGTCGGCGA | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGATACAGCAGGCAAaaa............................................................................................................................................................................................................................................................................................................ | 18 | aaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...................................................................................................................................................................................................................................................................................................................................................TGACTATGTAGCCTATGTCTGGGTCGGC.. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................CAGCAGCTCCTGGGACTGGATCGGA........................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................TAATGACTATGTAGCCTATGTCTGGGTCGGt.. | 31 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................CCTGGGACTGGATCGGACTATACAAGG.............................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGGGACTGGATCGGACTATACAAGGTGgg.......................................................................................................................................................................................................................................................................................................................... | 29 | gg | 1.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................TGACTATGTAGCCTATGTCTGGGTCGG... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TCCTGGGACTGGATCGGACTATACAA................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................GTGGGGATGCGTCttgg................................. | 17 | ttgg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...............TCAGCAGCTCCTGGGACTGGATCGGAt....................................................................................................................................................................................................................................................................................................................................... | 27 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................TCCTGGGACTGGATCGGACTATACAAG............................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................CTCCTGGGACTGGATCGGACTATACAA................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGGGACTGGATCGGACTATACAAGG.............................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................CAGCAGCTCCTGGGACTGGATCGGACT...................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ................CAGCAGCTCCTGGGACTGGATCGGAa....................................................................................................................................................................................................................................................................................................................................... | 26 | a | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ................................................................................................................................................................................................................................................................................................................................................TAATGACTATGTAGCCTATGTCTGGGTCGt... | 30 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...........................GGGACTGGATCGGACTATACAAGGTGATACA....................................................................................................................................................................................................................................................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................CTGGGACTGGATCGGACTATACAAG............................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGGGACTGGATCGGACTATACAAGGTGg........................................................................................................................................................................................................................................................................................................................... | 28 | g | 1.00 | 3.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CCACCCCAGAGTTCCTCAGCAGCTCCTGGGACTGGATCGGACTATACAAGGTGATACAGCAGGCAAGGCAGGGAGTCCATTATCCCCTGGTTTGTCCATCACTGGGGCACACAGGAGCTGGCCAGAGACAACTGAAGAGCTTACCCCTGTTCACCCCAGGGACCCTGTCCAACTTAGGGCCCGTCAGCAAAGAGAAGACTTAGTGTTAAGACCAGCCCTGGCAATAAGATCTGCCCCTTACAGATCTTCTCCTTAGGATCTTTCTGTAGCTCTCATACCCTCTTCACCCACTGACTGCCTGCCTGATTCCCACTCACAGGTGGGGATGCGTCACATTAATGACTATGTAGCCTATGTCTGGGTCGGCGA ...........................................................................................................................................................................................................................((((..((((((((.......)))))))).................((((.((....................)))))).)))).................................................................. ...........................................................................................................................................................................................................................220................................................................................................319................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM475279(GSM475279) Miwi-IP. (miwi testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR037900(GSM510436) testes_rep1. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR363960(GSM822762) Adult Library#1Small RNA Miwi IPDuplexed run:. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR037898(GSM510434) ovary_rep3. (ovary) | SRR037901(GSM510437) testes_rep2. (testes) | GSM475281(GSM475281) total RNA. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................ATCGGACTATACAAgatc................................................................................................................................................................................................................................................................................................................................ | 18 | gatc | 4.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...CCCCAGAGTTCCTCAGCAGCTC........................................................................................................................................................................................................................................................................................................................................................ | 22 | 1 | 3.00 | 3.00 | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................ACAAGGTGATACAGcgga...................................................................................................................................................................................................................................................................................................................... | 18 | cgga | 2.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................CTCCTTAGGATCTTTCTGTAGCTCTCA.............................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................ACAAGGTGATACAGCcgga..................................................................................................................................................................................................................................................................................................................... | 19 | cgga | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................GGACCCTGTCCAAaagc..................................................................................................................................................................................................... | 17 | aagc | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................TGACTGCCTGCCTGATTCCCACTCACAt................................................... | 28 | t | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................GACTGCCTGCCTGATTCCCACTCACAt................................................... | 27 | t | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................TCTCCTTAGGATCTTTCTGTAGCTCTCA.............................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................GCCTGCCTGATTCCCACTCACAcgtc................................................... | 26 | cgtc | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................CCCTGGCAATAAGATatt........................................................................................................................................... | 18 | att | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................ATCGGACTATACAAgttc................................................................................................................................................................................................................................................................................................................................ | 18 | gttc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................ATCGGACTATACAAgtta................................................................................................................................................................................................................................................................................................................................ | 18 | gtta | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .........................................ACAAGGTGATACAcgga....................................................................................................................................................................................................................................................................................................................... | 17 | cgga | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................CTTCTCCTTAGGATCcctt............................................................................................................. | 19 | cctt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |