(7)
OTHER.mut
(4)
PIWI.ip
(1)
PIWI.mut
(1)
TDRD1.ip
(26)
TESTES

Sense strand
GGGCAAAGGCTCCTGTGCGGTTGAGGACCGGCGCTGCGCGGCCACGTGAGGTGGGGGAGGGGGCTGTTAGGTGAGGGCATGTGGAGGGGGTTGGCGGCCGGCGGGGGGAGGGGAGGCGGCATGGTCCTGGCCTGGCGCAGCTTTGGGGCAGGGGCAGCCGTAGCACCGGAAGTGTTCCCCATTGGAGGCTGCCCTCGGGGTCCGAGGCCATGCGGCCGAACGTTGACCGGGGCCGCATGGCTGCACGGGGACCCCTCCCCCCTGGCCCGGGCCACCGGAAGCCCCGGGCGACCACATGGTGGGCGCGAGCCGGCAACCCTCAGCGCAAGGAGCTCTGGTCTTTTTTGGGTTTCTCCGGAGCCTTGGATTTTGGCGTGCGGGAGAGACCCTACCCTTGGGTCTCACTCATCCCGCAGGGCCCGTTGCAGGCATATGTTAGTGTTCCCCAGCCTCATGGGCCTCTGGA
.......................................................................................................................................................................................................................................................................................................................................................................(((.........))).((((((((((((((.......))))))).....)))))))...................................................
.....................................................................................................................................................................................................................................................................................................................................................................358.......................................................416................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT1()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
...................GTTGAGGACCGGCGCTGCGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................... 22 1 10.00 10.00 10.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............CTGTGCGGTTGAGGACCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 20 1 7.00 7.00 7.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............TGTGCGGTTGAGGACCGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................. 19 1 5.00 5.00 - - - 5.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCCGCAGGGCCCGTTGCAGGCATA................................. 28 1 3.00 3.00 - - 3.00 - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................................................................................................................................................................TGGGTTTCTCCGGAGCCTTGGATTTTGGC............................................................................................ 29 1 3.00 3.00 - - - - - - - - 3.00 - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAGTGTTCCCCAGCCTCATGGGCCTCT... 30 1 3.00 3.00 - - - - - 3.00 - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAGTGTTCCCCAGCCTCATGGGCCT..... 28 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGGCATATGTTAGTGTTCCCCAGC................ 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................TTGGATTTTGGCGTGCGGGAGAGACC.............................................................................. 26 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............TGTGCGGTTGAGGACCGGCGCTGCGCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................ 29 1 2.00 2.00 - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................................................................................................................................................................TACCCTTGGGTCTCACTCATCCCGCA................................................... 26 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAGTGTTCCCCAGCCTCATGGGCC...... 27 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................................TGGCCTGGCGCAGCTTTGGGGCAGtta........................................................................................................................................................................................................................................................................................................................ 27 tta 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............TGTGCGGTTGAGGACCGGCGCTGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.............TGTGCGGTTGAGGACCGGCGCTGCGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................TGCGCGGCCACGTGAGGTGGGGGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................TAGGTGAGGGCATGTGGAGGGG......................................................................................................................................................................................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................CATTGGAGGCTGCCCTCGGGGTCCGAGGCC................................................................................................................................................................................................................................................................. 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................CATCCCGCAGGGCCCGTTGCAGGCAT.................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.................................................................................................................................................................................................................ATGCGGCCGAACGTTGACC.............................................................................................................................................................................................................................................. 19 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................TGGTCTTTTTTGGGTTTCTCCGGAGC......................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
........................................................................................................................................................................................................................................................................................................................................GGAGCTCTGGTCTTTTTTGGGTTTCTCCGGAG.......................................................................................................... 32 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.....AAGGCTCCTGTGCGGTTGAGGACCGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................AGCACCGGAAGTGTTCCtaa............................................................................................................................................................................................................................................................................................. 20 taa 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.........................................................AGGGGGCTGTTAGGTGAGGGCATGTG............................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................GATTTTGGCGTGCGGGAGAGACCC............................................................................. 24 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TAGCACCGGAAGTGTTCCCCATTGGAGGC..................................................................................................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCATATGTTAGTGTTCCCCA.................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................GCCGGCGGGGGGAGGGGAGG.............................................................................................................................................................................................................................................................................................................................................................. 20 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
................................................................................................................................................................TAGCACCGGAAGTGTTCCCCATTGGA........................................................................................................................................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...................................................................TAGGTGAGGGCATGTGGAGGGGGTT...................................................................................................................................................................................................................................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGGCATATGTTAGTGTTCCCCAGC................ 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................................................................................TGGGCGCGAGCCGGCAACCCTCAGCGCAAGG........................................................................................................................................ 31 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.............TGTGCGGTTGAGGACCGGCGCTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................TTGGATTTTGGCGTGCGGGAGAGACCC............................................................................. 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............TGTGCGGTTGAGGACCGGCGCTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................ 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................TGCGCGGCCACGTGAGGTGGGGG......................................................................................................................................................................................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..........................................................................................................................................................................................................................................................................................................................................................................TTGGATTTTGGCGTGCGGGAGAGAC............................................................................... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............TGCGGTTGAGGACCGGCGCTGCGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................CGGCCACGTGAGGTGGGGGAGGGGGCTGTTA............................................................................................................................................................................................................................................................................................................................................................................................................. 31 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
....................TTGAGGACCGGCGCTGCGCGGCCACG.................................................................................................................................................................................................................................................................................................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
................................................................TGTTAGGTGAGGGCATGTGGAGG........................................................................................................................................................................................................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................TCTCCGGAGCCTTGGATTTTGGCGTG......................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.................................................................................................................................................................................................................................................................................................................................................................TCCGGAGCCTTGGATTTTGGCGTGC........................................................................................ 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTAGTGTTCCCCAGCCTCATGGGCCT..... 30 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............TGCGGTTGAGGACCGGCGCTGCGCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................TCTGGTCTTTTTTGGGTTTCTCCGG............................................................................................................ 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................CTGTTAGGTGAGGGCATGTGGAGGGt......................................................................................................................................................................................................................................................................................................................................................................................... 26 t 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................AGGGCATGTGGAGGGGG........................................................................................................................................................................................................................................................................................................................................................................................ 17 4 0.75 0.75 - - - 0.75 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CATATGTTAGTGTTCCCC................... 18 2 0.50 0.50 - - - - - - - - - - - - - - - - - - - - - - - - 0.50 -
.........................................................................................................GGGAGGGGAGGCGGC.......................................................................................................................................................................................................................................................................................................................................................... 15 13 0.08 0.08 - - - - - - - - - - - - - - - - - - - - - - - - - 0.08

Antisense strand
GGGCAAAGGCTCCTGTGCGGTTGAGGACCGGCGCTGCGCGGCCACGTGAGGTGGGGGAGGGGGCTGTTAGGTGAGGGCATGTGGAGGGGGTTGGCGGCCGGCGGGGGGAGGGGAGGCGGCATGGTCCTGGCCTGGCGCAGCTTTGGGGCAGGGGCAGCCGTAGCACCGGAAGTGTTCCCCATTGGAGGCTGCCCTCGGGGTCCGAGGCCATGCGGCCGAACGTTGACCGGGGCCGCATGGCTGCACGGGGACCCCTCCCCCCTGGCCCGGGCCACCGGAAGCCCCGGGCGACCACATGGTGGGCGCGAGCCGGCAACCCTCAGCGCAAGGAGCTCTGGTCTTTTTTGGGTTTCTCCGGAGCCTTGGATTTTGGCGTGCGGGAGAGACCCTACCCTTGGGTCTCACTCATCCCGCAGGGCCCGTTGCAGGCATATGTTAGTGTTCCCCAGCCTCATGGGCCTCTGGA
.......................................................................................................................................................................................................................................................................................................................................................................(((.........))).((((((((((((((.......))))))).....)))))))...................................................
.....................................................................................................................................................................................................................................................................................................................................................................358.......................................................416................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT1()
Testes Data. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
...................................................................................................................................................................CACCGGAAGTGTTCCCCATT........................................................................................................................................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.............................................................................................CCGGCGGGGGGAGtcgt.................................................................................................................................................................................................................................................................................................................................................................... 17 tcgt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.....................................................................................................................................................................................................................................................GGACCCCTCCCCCCTaaa........................................................................................................................................................................................................... 18 aaa 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..................................................................................................................................................................................................................................................................................................................................................................................................................TCATCCCGCAGGGCCacc.............................................. 18 acc 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................................GACCCCTCCCCCCTtaga........................................................................................................................................................................................................... 18 taga 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -