(1)
OTHER.ip
(5)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(28)
TESTES

Sense strand
TCTCTTTGCAGCTTACCTTGACAATCAGAACGTTGTTGAAGAATCTGAAGGTAAAGATCGACCTTTTGAAGGACTTACTGCTAAGAGCTGTGTCGACACGCCAGATGTATCCATGTAAACATTTCCACCTTTTCTGGAGTGGGAGGAAAAACAATCTTAAGACAGGAAGGAATCTGGGCCATCCAGATTTTTCCACAGCTCAAGGAGGACTTGGTTTCCACACTGTTGCTATAATTTTACATTCTGTCTT
..............................................................((((((.((......))..))))))..(((....))).((((((...(((.(((.....(((((((((.....)).))))))).....))).((((.....)))).))))))))).........................................................................
............................................................61....................................................................................................................179.....................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
....................................TGAAGAATCTGAAGGTAAAGATCGAC............................................................................................................................................................................................ 26 1 19.00 19.00 4.00 5.00 - - - - 2.00 1.00 1.00 2.00 - - - 2.00 - - 1.00 - - - - - - - - - - 1.00 -
.................................................................TTGAAGGACTTACTGCTAAGAGCTGT............................................................................................................................................................... 26 1 10.00 10.00 - - 1.00 7.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - 1.00
....................................TGAAGAATCTGAAGGTAAAGATCGACC........................................................................................................................................................................................... 27 1 7.00 7.00 1.00 2.00 1.00 - 1.00 - - - - 1.00 - - - - - - - - - 1.00 - - - - - - - - -
.................................TGTTGAAGAATCTGAAGGTAAAGATCGAC............................................................................................................................................................................................ 29 1 5.00 5.00 2.00 1.00 - - - - 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - -
..................................................................TGAAGGACTTACTGCTAAGAGCTGTG.............................................................................................................................................................. 26 1 5.00 5.00 - 1.00 - - - - - - 1.00 - 1.00 - - - 1.00 - 1.00 - - - - - - - - - - - -
...................................TTGAAGAATCTGAAGGTAAAGATCGAC............................................................................................................................................................................................ 27 1 5.00 5.00 1.00 1.00 - - 1.00 - - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - -
........................TCAGAACGTTGTTGAAGAATCTGAAG........................................................................................................................................................................................................ 26 1 5.00 5.00 - - - 2.00 - 1.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - -
..................TGACAATCAGAACGTTGTTGAAGAATC............................................................................................................................................................................................................. 27 1 4.00 4.00 - - 2.00 - - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - -
.................................TGTTGAAGAATCTGAAGGTAAAGATCGA............................................................................................................................................................................................. 28 1 3.00 3.00 2.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................TGAAGGACTTACTGCTAAGAGCTGT............................................................................................................................................................... 25 1 2.00 2.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TACTGCTAAGAGCTGTGTCGACACGC..................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - -
.................................................................................TAAGAGCTGTGTCGACACGCCAGATaac............................................................................................................................................. 28 aac 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 2.00 - - - - - -
..................TGACAATCAGAACGTTGTTGAAGAATCT............................................................................................................................................................................................................ 28 1 2.00 2.00 - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................TGACAATCAGAACGTTGTTGAAGAATCTGA.......................................................................................................................................................................................................... 30 1 2.00 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - 1.00 - - - - - - -
..........................AGAACGTTGTTGAAGAATC............................................................................................................................................................................................................. 19 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
........................TCAGAACGTTGTTGAAGAATCTGAAGG....................................................................................................................................................................................................... 27 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................TGAAGGACTTACTGCTAAGAGCTGTGT............................................................................................................................................................. 27 1 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................TGTTGAAGAATCTGAAGGTAAAGA................................................................................................................................................................................................. 24 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................TGACAATCAGAACGTTGTTGAAGAATCTG........................................................................................................................................................................................................... 29 1 2.00 2.00 - - - - - 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
........................TCAGAACGTTGTTGAAGAATCTGAAGGTA..................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...................................................................................................................................................AAAACAATCTTAAGACAGGAAGGAATCT........................................................................... 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................TCAGAACGTTGTTGAAGAATCTGAA......................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.........................CAGAACGTTGTTGAAGAATCTGAAGGT...................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................GTAAAGATCGACCTTTTGAAGGACTTAC............................................................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
................................................................................................................................................GGAAAAACAATCTTAAGACAGGAAGGAATC............................................................................ 30 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TACTGCTAAGAGCTGTGTCGACACGCCA................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
....................................................................AAGGACTTACTGCTAAGAGCTGTGTCGAC......................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.........................CAGAACGTTGTTGAAGAATCTGAAG........................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.........................CAGAACGTTGTTGAAGAATCTGAAGG....................................................................................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...................GACAATCAGAACGTTGTTGAAGAATCTG........................................................................................................................................................................................................... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................AGAACGTTGTTGAAGAATCTGAAGGTAAA................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.............................ACGTTGTTGAAGAATCTGAAGGTAAAGATC............................................................................................................................................................................................... 30 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................TTGAAGGACTTACTGCTAAGAGCTGTG.............................................................................................................................................................. 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................TTCCACACTGTTGCTATAATTTTACATTCT..... 30 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...................................TTGAAGAATCTGAAGGTAAAGATCGACCT.......................................................................................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................TGTTGAAGAATCTGAAGGTAAAGATC............................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
....................................TGAAGAATCTGAAGGTAAAGATCGACCT.......................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................GGAAAAACAATCTTAAGACAGGAAGGAA.............................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................TTGAAGAATCTGAAGGTAAAGATCGA............................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..................................................................TGAAGGACTTACTGCTAAGA.................................................................................................................................................................... 20 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...........................................................................TACTGCTAAGAGCTGTGTCGACACGCCAGA................................................................................................................................................. 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..............................................................................TGCTAAGAGCTGTGTCGACACGCCAG.................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
..............................................................................TGCTAAGAGCTGTGTCGACACGCCAGA................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
..................TGACAATCAGAACGTTGTTGAAGAA............................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..................................GTTGAAGAATCTGAAGGTAAAGATCGACC........................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...........................GAACGTTGTTGAAGAATCTGAAGGTA..................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.................................TGTTGAAGAATCTGAAGGTAAAGATCGAt............................................................................................................................................................................................ 29 t 1.00 3.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................TCAGAACGTTGTTGAAGAATCTGAAcgta..................................................................................................................................................................................................... 29 cgta 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...............................................................................................................................................................................................................................TGTTGCTATAATTTTACATTCTGTta. 26 ta 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
................................................................TTTGAAGGACTTACTGCTAAGA.................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
..................................................................TGAAGGACTTACTGCTAAGAGCTttg.............................................................................................................................................................. 26 ttg 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...........................................................................TACTGCTAAGAGCTGTGTCGACACGCC.................................................................................................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................TTTTGAAGGACTTACTGCTAAGAGC.................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
...................................TTGAAGAATCTGAAGGTAAAGATCGACC........................................................................................................................................................................................... 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................AAAACAATCTTAAGACAGGAAGGAATC............................................................................ 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................TCTTAAGACAGGAAGGAATCTGGGCC...................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................TAAGAGCTGTGTCGACACGCCAGAT................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.................................................................TTGAAGGACTTACTGCTAAGAGCTGTGTC............................................................................................................................................................ 29 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
....................................TGAAGAATCTGAAGGTAAAGATagac............................................................................................................................................................................................ 26 agac 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................TTGAAGAATCTGAAGGTAAAGATCGACCTT......................................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
................................................................TTTGAAGGACTTACTGCTAAGAGCTG................................................................................................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................TGACAATCAGAACGTTGTTGAAGAATCTGt.......................................................................................................................................................................................................... 30 t 1.00 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -

Antisense strand
TCTCTTTGCAGCTTACCTTGACAATCAGAACGTTGTTGAAGAATCTGAAGGTAAAGATCGACCTTTTGAAGGACTTACTGCTAAGAGCTGTGTCGACACGCCAGATGTATCCATGTAAACATTTCCACCTTTTCTGGAGTGGGAGGAAAAACAATCTTAAGACAGGAAGGAATCTGGGCCATCCAGATTTTTCCACAGCTCAAGGAGGACTTGGTTTCCACACTGTTGCTATAATTTTACATTCTGTCTT
..............................................................((((((.((......))..))))))..(((....))).((((((...(((.(((.....(((((((((.....)).))))))).....))).((((.....)))).))))))))).........................................................................
............................................................61....................................................................................................................179.....................................................................
Size Perfect hit Total Norm Perfect Norm SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
mjTestesWT4()
Testes Data. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)
...........................................................................................................................................................................................TTTTTCCACAGCTCA................................................ 15 10 0.10 0.10 - - - - - - - - - - - - - - 0.10 - - - - - - - - - - - - - -