(6)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(25)
TESTES

Sense strand
ACCCTGCTGATCAGGACTTGGGATTGGAACAGGGCCTTTGTCCCCTAGCCAGGCTCCCTAGCAGAAGCAGATCAGACCCAGCTCCACCCTGATCCTGCAGTGCCCAACCTCTAATGAGCTAGCCTGAGCACACCCAGACCAGCCTGCTTCCTGTGCTGTCAGTTTGCAACTGGCCCCCTTTCGCCTCCTCCTCTCTGCAGATCTCGTCCACTTTGATGTCCCCTCCATCCACATAGAGCTGGGGTCAACG
.....................................................(((.(((((....(((((((((.............)))))).))).((.....)).........)))))...)))..........................................................................................................................
.....................................................54......................................................................................142..........................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
.......TGATCAGGACTTGGGATTGGAACAGGGC....................................................................................................................................................................................................................... 28 1 15.00 15.00 1.00 3.00 2.00 2.00 1.00 - - - - 3.00 1.00 1.00 - - - - - - - 1.00 - - - - -
....TGCTGATCAGGACTTGGGATTGGAAC............................................................................................................................................................................................................................ 26 1 10.00 10.00 1.00 1.00 2.00 - 1.00 - - 1.00 1.00 - 2.00 - - - 1.00 - - - - - - - - - -
...............................................................................................................TAATGAGCTAGCCTGAGCACACCCAGA................................................................................................................ 27 1 6.00 6.00 2.00 3.00 - - - - - 1.00 - - - - - - - - - - - - - - - - -
.........................................................................................TGATCCTGCAGTGCCCAACCTCTAATGAGC................................................................................................................................... 30 1 5.00 5.00 - 1.00 - - 2.00 - - - - 1.00 - - 1.00 - - - - - - - - - - - -
..........................................................TAGCAGAAGCAGATCAGACCCAGCTCC..................................................................................................................................................................... 27 1 4.00 4.00 1.00 3.00 - - - - - - - - - - - - - - - - - - - - - - -
..........TCAGGACTTGGGATTGGAACAGGGCC...................................................................................................................................................................................................................... 26 1 4.00 4.00 1.00 - - 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - -
...............................................................................................................................................................................................TCTCTGCAGATCTCGTCCACTTTGATG................................ 27 1 4.00 4.00 1.00 - - - - 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - -
..........TCAGGACTTGGGATTGGAACAGGGC....................................................................................................................................................................................................................... 25 1 3.00 3.00 - 1.00 - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - -
.........................................................................................TGATCCTGCAGTGCCCAACCTCTAATGA..................................................................................................................................... 28 1 2.00 2.00 - - - - - - 1.00 - 1.00 - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TGCAGATCTCGTCCACTTTGATGTC.............................. 25 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.........ATCAGGACTTGGGATTGGAACAGGGC....................................................................................................................................................................................................................... 26 1 2.00 2.00 - - - 1.00 - - - - - - - 1.00 - - - - - - - - - - - - -
.........................................................................................TGATCCTGCAGTGCCCAACCTCTAAT....................................................................................................................................... 26 1 2.00 2.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................................TAATGAGCTAGCCTGAGCACACCCAGACC.............................................................................................................. 29 1 2.00 2.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................TAGCAGAAGCAGATCAGACCCAGCTC...................................................................................................................................................................... 26 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................GAAGCAGATCAGACCCAGCTCCACCCT................................................................................................................................................................ 27 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
..........TCAGGACTTGGGATTGGAACAGGG........................................................................................................................................................................................................................ 24 1 2.00 2.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................TAGCCAGGCTCCCTAGCAGAAGCAGATC................................................................................................................................................................................. 28 1 2.00 2.00 - - - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - -
...............................................................................................TGCAGTGCCCAACCTCTAATGAGCTAGC............................................................................................................................... 28 1 2.00 2.00 - - - - - - 1.00 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................TCTAATGAGCTAGCCTGAGCACACCCAGA................................................................................................................ 29 1 2.00 2.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - -
......................................................................................................................CTAGCCTGAGCACACCCAGACCAGCCT......................................................................................................... 27 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................GCAGAAGCAGATCAGACCCAGCTCCA.................................................................................................................................................................... 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................TGAGCTAGCCTGAGCACACCCAGACC.............................................................................................................. 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................TCTGCAGATCTCGTCCACTTTGATGTCC............................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................TCTAATGAGCTAGCCTGAGCACACCC................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.......................................................................................................................................................................................................GATCTCGTCCACTTTGATGTCCC............................ 23 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..........................................................................................GATCCTGCAGTGCCCAACCTCTAATGAG.................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
............................................................GCAGAAGCAGATCAGACCCAGCTCCACC.................................................................................................................................................................. 28 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
..........TCAGGACTTGGGATTGGAACA........................................................................................................................................................................................................................... 21 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................TCTCTGCAGATCTCGTCCACTTTGATGTC.............................. 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
............................................................GCAGAAGCAGATCAGACCCAGCTCCAC................................................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................CACACCCAGACCAGCCTGC....................................................................................................... 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...............................................................................................................................................................................................TCTCTGCAGATCTCGTCCACTTTGAT................................. 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.........................................................................................TGATCCTGCAGTGCCCAACCTCTAATG...................................................................................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.................................................................AGCAGATCAGACCCAGCTCCACCCTG............................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................CGCCTCCTCCTCTCTGCAGATCTCGTC.......................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................TGAGCTAGCCTGAGCACACCCAGACCA............................................................................................................. 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................TGCTTCCTGTGCTGTCAGTTTGCAAC................................................................................ 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
...............................................................................................TGCAGTGCCCAACCTCTAATGAGCTAG................................................................................................................................ 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
................................................................AAGCAGATCAGACCCAGCTCCACCCTG............................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................GGGATTGGAACAGGGCCTTTGacc............................................................................................................................................................................................................... 24 acc 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
...................................................................................................................................................................................................TGCAGATCTCGTCCACTTTGATGTCCCaaa......................... 30 aaa 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................ATGAGCTAGCCTGAGCACACCCAGAC............................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................TTCCTGTGCTGTCAGTTTGCAACTGGC............................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
....................................................................................................................................................................................................GCAGATCTCGTCCACTTTGATGTCCCC........................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TGCAGATCTCGTCCACTTTGATGTCCCC........................... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
....TGCTGATCAGGACTTGGGATTGGAACA........................................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.....................................TTGTCCCCTAGCCAGGCTCCCTAGCAGA......................................................................................................................................................................................... 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -

Antisense strand
ACCCTGCTGATCAGGACTTGGGATTGGAACAGGGCCTTTGTCCCCTAGCCAGGCTCCCTAGCAGAAGCAGATCAGACCCAGCTCCACCCTGATCCTGCAGTGCCCAACCTCTAATGAGCTAGCCTGAGCACACCCAGACCAGCCTGCTTCCTGTGCTGTCAGTTTGCAACTGGCCCCCTTTCGCCTCCTCCTCTCTGCAGATCTCGTCCACTTTGATGTCCCCTCCATCCACATAGAGCTGGGGTCAACG
.....................................................(((.(((((....(((((((((.............)))))).))).((.....)).........)))))...)))..........................................................................................................................
.....................................................54......................................................................................142..........................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
.............................................................................................................................................................................................CCTCTCTGCAGATCTCGTCCACTTTGA.................................. 27 1 4.00 4.00 2.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................CCTCCTCTCTGCAGATCTCGTCCACT...................................... 26 1 4.00 4.00 - 1.00 - 1.00 - - - - - 1.00 - - - 1.00 - - - - - - - - - - -
.......................................................................................................................................................................................CCTCCTCCTCTCTGCAGATCTCGTCCA........................................ 27 1 3.00 3.00 1.00 - - - 1.00 - - - - 1.00 - - - - - - - - - - - - - - -
...............................................................................................................................................................TTGCAACTGGCCCtgga.......................................................................... 17 tgga 2.00 0.00 - - - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - -
......................................................................................................................................................................................GCCTCCTCCTCTCTGCAGATCTCGTC.......................................... 26 1 2.00 2.00 - - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - -
.................................GCCTTTGTCCCCTAGCCAGGCTCCCTAG............................................................................................................................................................................................. 28 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................CACTTTGATGTCCCCTCCATCCACA................. 25 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................................................................................CTGATCCTGCAGTGCCCAACCTCTAAt........................................................................................................................................ 27 t 2.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - 1.00 -
.....................................TTGTCCCCTAGCCAGGCTCCCTAGCA........................................................................................................................................................................................... 26 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................ACTTTGATGTCCCCTCCATCCACAta................. 26 ta 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................ACTTTGATGTCCCCTCCATCCACATAG.............. 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.......................................................................................................................................AGACCAGCCTGCTTCCTGTGCTGTCA......................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
........................................................................................................AACCTCTAATGAGCTAGCCTGAGCACAc...................................................................................................................... 28 c 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.........................................................................................................AACCTCTAATGAGCTAGCCTGAGCACA...................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..............................................................................................................................................................................CCCCTTTCGCCTCCTCCTCTCTGCAGA................................................. 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................CTCCTCTCTGCAGATCTCGTCCACTTT.................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................GATCCTGCAGTGCCCAACCTCTAAT....................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................................................................................CACCCAGACCAGCCTGCTTCCTGTa................................................................................................ 25 a 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.........................................................................................................................................................................................CCTCCTCTCTGCAGATCTCGTCCACTTt..................................... 28 t 1.00 0.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.......................................................................................CCTGATCCTGCAGTGCCCAACCTCTAA........................................................................................................................................ 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...........................................................................ACCCAGCTCCACCCTGATCCTGCA....................................................................................................................................................... 24 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................TCCATCCACATAGAGCtg........... 18 tg 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.................................................................................................................................................................GCAACTGGCCCgcaa.......................................................................... 15 gcaa 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................TTTGATGTCCCCTCCATCCACATAGA............. 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
...................................................................................................................................................................................TTCGCCTCCTCCTCTCTGCAGATCTC............................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
...................................................................................................................................ACCCAGACCAGCCTGCTTCCTGTGCT............................................................................................. 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................GCTGTCAGTTTGCAcact.................................................................................. 18 cact 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
............................................................................................................................................................................................TCCTCTCTGCAGATCTCGTCCACTTTG................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
...........................................................................................ATCCTGCAGTGCCCAACCTCTAA........................................................................................................................................ 23 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................CCTTTCGCCTCCTCCTCTCTGCAGAa................................................. 26 a 1.00 0.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.....GATCAGGACTTGGGgag.................................................................................................................................................................................................................................... 17 gag 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................CCTGCAGTGCCCAACCTCTAATGAGCTA................................................................................................................................. 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................TTCGCCTCCTCCTCTCTGCAGATCTCt............................................. 27 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................ACTTTGATGTCCCCTCCATCCACATA............... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................CCAGCCTGCTTCCTGTGCTGTCAa......................................................................................... 24 a 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................GATCCTGCAGTGCCCAACCTCTAA........................................................................................................................................ 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................CCCAGACCAGCCTGCTTCCTGTGCT............................................................................................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................CTGATCCTGCAGTGCCCAACC............................................................................................................................................. 21 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................CTGATCCTGCAGTGCCCAACCTCTAAa........................................................................................................................................ 27 a 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................AGCACACCCAGACCA............................................................................................................. 15 14 0.21 0.21 - - - - - - - - - - - - - - - - - - - - - - - - 0.21
............................................................................................TCCTGCAGTGCCCAA............................................................................................................................................... 15 8 0.12 0.12 - - 0.12 - - - - - - - - - - - - - - - - - - - - - -