(1)
OTHER.ip
(6)
OTHER.mut
(1)
OVARY
(4)
PIWI.ip
(3)
PIWI.mut
(27)
TESTES

Sense strand
CCCGATCTATCTGTGTGTTAACCCAGTTACCAGGAGGGAACTCAAGATGCTGGCCTAGGCAAAGTGGGAAGGTTATCCACGTGGAGAACCTGGAGCAGTAACAGAGAGAGCTGGTGACTACCAATCTCGTTGGGCTACAGTGGGCTGCAGTCCCCAGGCAAGCTGCTGCTCTAACAGCTGTTCTCCCTCTGCTGGCCCAGGCTGCCCTGGACTTCGTGGTGGAGGAAGACCTGAAGGCCCACCTCACCTG
...................................................(((((((((...((....(((((.(((....))).)))))...)).....(((.((((..((((....)))).)))).))).)))....))))))........................................................................................................
..................................................51..............................................................................................147.....................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR037902(GSM510438)
testes_rep3. (testes)
...............................................................................................................................................................................................................TGGACTTCGTGGTGGAGGAAGACCTG................. 26 1 71.00 71.00 30.00 18.00 1.00 10.00 7.00 - - - 2.00 - - - 1.00 - - - - - - - - - - 1.00 - 1.00 - -
...............................................................................................................................................................................................................TGGACTTCGTGGTGGAGGAAGACCTGA................ 27 1 25.00 25.00 13.00 6.00 - 2.00 3.00 - - - - 1.00 - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TGCCCTGGACTTCGTGGTGGAGGAAG...................... 26 1 13.00 13.00 1.00 3.00 - - - - 7.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - -
..........................................................................................................................................................................................................TGCCCTGGACTTCGTGGTGGAGGAAGAC.................... 28 1 11.00 11.00 1.00 4.00 - 3.00 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - -
...........................TACCAGGAGGGAACTCAAGATGCTGGC.................................................................................................................................................................................................... 27 1 9.00 9.00 - 2.00 3.00 - - 1.00 - - - 1.00 - 1.00 - - - - - - - - - - 1.00 - - - - -
......................................................................................................................TACCAATCTCGTTGGGCTACAGTGGGC......................................................................................................... 27 1 7.00 7.00 - 1.00 - - - 1.00 - 5.00 - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TACCAATCTCGTTGGGCTACAGTGG........................................................................................................... 25 1 6.00 6.00 - - 4.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
...........................TACCAGGAGGGAACTCAAGATGCTGGCC................................................................................................................................................................................................... 28 1 5.00 5.00 1.00 1.00 - - 1.00 - - - - - - - - - - 2.00 - - - - - - - - - - - -
..........................................................................................................................................................................................................TGCCCTGGACTTCGTGGTGGAGGAAGA..................... 27 1 4.00 4.00 1.00 - - 1.00 - - - - - - 2.00 - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TGCCCTGGACTTCGTGGTGGAGGAAGACC................... 29 1 4.00 4.00 - 1.00 - 2.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGGACTTCGTGGTGGAGGAAGACCT.................. 25 1 3.00 3.00 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TACCAATCTCGTTGGGCTACAGTGGG.......................................................................................................... 26 1 3.00 3.00 - - 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGGACTTCGTGGTGGAGGAAGACCTGt................ 27 t 3.00 71.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGGACTTCGTGGTGGAGGAAGACC................... 24 1 3.00 3.00 1.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TCCACGTGGAGAACCTGGAGCAGTAA..................................................................................................................................................... 26 1 2.00 2.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................TAACAGAGAGAGCTGGTGACTACCAAT............................................................................................................................. 27 1 2.00 2.00 - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................CTGGACTTCGTGGTGGAGGAAGACCTGA................ 28 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TCCACGTGGAGAACCTGGAGCAGTAAC.................................................................................................................................................... 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................AGGCTGCCCTGGACTTCGTGGTGGAGG......................... 27 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................CACGTGGAGAACCTGGAGCAGTAACA................................................................................................................................................... 26 1 2.00 2.00 - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - -
...................................................................................GAGAACCTGGAGCAGTAACAGAGAGA............................................................................................................................................. 26 1 2.00 2.00 - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................TGGACTTCGTGGTGGAGGAAGACCTGAA............... 28 1 2.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
..........................................................................................................................................................................................................TGCCCTGGACTTCGTGGTGGAGGAAGt..................... 27 t 1.00 13.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................CGTGGTGGAGGAAGACCTGAAGGCCC.......... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................GAGAACCTGGAGCAGTAACAGAGAGAGC........................................................................................................................................... 28 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................TTCGTGGTGGAGGAAGACCTGAAG.............. 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TCTCGTTGGGCTACAGTGGGCTGCA..................................................................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................GGAGGGAACTCAAGATGCTGGCCTAGG............................................................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................GTTACCAGGAGGGAACTCAAGATGC........................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
..............................................ATGCTGGCCTAGGCtagt.......................................................................................................................................................................................... 18 tagt 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..............................................................................ACGTGGAGAACCTGGAGCAGTAACAG.................................................................................................................................................. 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................TGGGCTACAGTGGGCTGCAGT................................................................................................... 21 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
...............................................................................................................................................................................................................TGGACTTCGTGGTGGAGGA........................ 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..................................AGGGAACTCAAGATGCTGGCCTAGGCAAA........................................................................................................................................................................................... 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................GAGAACCTGGAGCAGTAACAGAGAGAG............................................................................................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................GGACTTCGTGGTGGAGGAAGACCTGA................ 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TCTCGTTGGGCTACAGTGGGCTG....................................................................................................... 23 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................GTGGAGAACCTGGAGCAGTAACAGAGA............................................................................................................................................... 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TGCCCTGGACTTCGTGGTGGcga......................... 23 cga 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.............................................................................CACGTGGAGAACCTGGAGCAGTAACAGA................................................................................................................................................. 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TCTCGTTGGGCTACAGTGGGCTGCAGTC.................................................................................................. 28 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..............................................................AGTGGGAAGGTTATCCACGTGGAGAAC................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................ACGTGGAGAACCTGGAGCAGTAACAGAG................................................................................................................................................ 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................TCTCGTTGGGCTACAGTGGGCTGC...................................................................................................... 24 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................TGGTGACTACCAATCTCGTTGGGCTAC................................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................TGGAGCAGTAACAGAGAGAGCTGGTG...................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................GACTTCGTGGTGGgag......................... 16 gag 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................AGAACCTGGAGCAGTAACAGAGAGAGC........................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..............................................................................................................................................................................................................CTGGACTTCGTGGTGGAGGAAGACC................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................CAATCTCGTTGGGCTACAGTGGGCTGC...................................................................................................... 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................GTAACAGAGAGAGCTGGTGACTACCAA.............................................................................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.............................CCAGGAGGGAACTCAAGATGCTGGCCTAt................................................................................................................................................................................................ 29 t 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................TAACAGCTGTTCTCCCTCTGCTGGC...................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..............................................................................................................................................................................................................CTGGACTTCGTGGTGGAGGAAGACCTG................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
............................................................................................................................................................................................................CCCTGGACTTCGTGGTGGAGGAAGACt................... 27 t 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................AGGCTGCCCTGGACTTCGTGGTGGAGa......................... 27 a 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................TGGAGGAAGACCTGAAGGCCCACCTCAC... 28 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................CTAACAGCTGTTCTC................................................................. 15 12 0.17 0.17 - - - - - - - - - 0.17 - - - - - - - - - - - - - - - - - -

Antisense strand
CCCGATCTATCTGTGTGTTAACCCAGTTACCAGGAGGGAACTCAAGATGCTGGCCTAGGCAAAGTGGGAAGGTTATCCACGTGGAGAACCTGGAGCAGTAACAGAGAGAGCTGGTGACTACCAATCTCGTTGGGCTACAGTGGGCTGCAGTCCCCAGGCAAGCTGCTGCTCTAACAGCTGTTCTCCCTCTGCTGGCCCAGGCTGCCCTGGACTTCGTGGTGGAGGAAGACCTGAAGGCCCACCTCACCTG
...................................................(((((((((...((....(((((.(((....))).)))))...)).....(((.((((..((((....)))).)))).))).)))....))))))........................................................................................................
..................................................51..............................................................................................147.....................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR014234(GSM319958)
Ovary total. (ovary)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR037902(GSM510438)
testes_rep3. (testes)
.....................................................................................................................................................................TCTAACAGCTGTTCacca................................................................... 18 acca 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................TCTAACAGCTGTTCcca................................................................... 17 cca 1.00 0.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TCCCTCTGCTGGCCCAtgg................................................... 19 tgg 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
......................................................................................................................................................................TCTAACAGCTGTTCTcca.................................................................. 18 cca 0.05 0.00 - - - - - 0.05 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................TCTAACAGCTGTTCT.................................................................. 15 19 0.05 0.05 - - 0.05 - - - - - - - - - - - - - - - - - - - - - - - - -