| Gene: Srebf1 | ID: uc007jfn.1_intron_6_0_chr11_60015764_r | SPECIES: mm9 |
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(8) OTHER.mut |
(1) OVARY |
(3) PIWI.ip |
(21) TESTES |
| CGTGCACGGTGCCCCCCCGGAGAGCCTGTACAGCGTGGCTGGGAACCCAGGTGCTTTCTCGTTCTGTTCTTACCCCTGCCTCATCCCTGTCCCTATGTCACATTGCACTGTCCCCTCTTCTCTGAATGCCCTCACTTACCAGCTTATATTGCCCTGTGGGGTTGGGGCTGTGAGGTGGCTATGAGGTGGCTTTTGCTGGATTTTGCCAAGGTTCTTTAGAAGCAGGAAGCAGTATGGGTCAGCAGACAATGGGGGACATGAGAGGTGACTCTAGGGGACACCATTGTTGTCTTAGGAAGAGTCCTGAGCAGAGTCAGGGCCATGGGTATGTGACTAAATAGGCTCTCCTTTCCAGTGTGTAGCTTGTGCACAGCCTACCCCTTCTTCCCCATCAAGCTTATGAGGGCAGGGACCCATCACTGTCTGTCTGTTAGGGTTTGGAACTAGGAAGTAGCTCTGGGTTGGGGCCCCAGCTTATTAAGGCATTGGTGTGGGAGGGGACTGTAGAGAGGAGGGTGCCTAACCTCTGTTCTGCTCACCCTTCTCACAGTGGATCCGCTGGCCCAGGTGACCCGGCTATTCCGTGAACATCTCCTAGAG .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((.((((((((....))))))))....))).....(((((((((((...((((((.(((((........))))).))))))...)))))))))))................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................451................................................................................................550................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT1() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR037897(GSM510433) ovary_rep2. (ovary) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGGGGACTGTAGAGAGG........................................................................................ | 23 | 1 | 17.00 | 17.00 | 4.00 | 1.00 | - | - | 3.00 | - | 3.00 | - | 4.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGGGGACTGTAGAGt.......................................................................................... | 21 | t | 9.00 | 0.00 | 8.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGGGGACTGTAGAGA.......................................................................................... | 21 | 1 | 8.00 | 8.00 | 2.00 | - | - | 2.00 | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTCTGCTCACCCTTCTCA..................................................... | 22 | 1 | 4.00 | 4.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTCTGCTCACCCTTCTCACA................................................... | 24 | 1 | 4.00 | 4.00 | - | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTCTGCTCACCCTTCT....................................................... | 20 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGGGGACTGTAGAGAG......................................................................................... | 22 | 1 | 3.00 | 3.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTAGCTCTGGGTTGG....................................................................................................................................... | 18 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................TTCTCTGAATGCCCccca................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 18 | ccca | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TGTACAGCGTGGCTGGGAACCCAGtgg................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | tgg | 2.00 | 0.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TGCCAAGGTTCTTTAGAAGCAGGAAG................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTGCTCACCCTTCTCACAGT................................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTCTGCTCACCCTTCTCACA................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTCTGCTCACCCTTCTCAC.................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGGGGACTGTAGAaa.......................................................................................... | 21 | aa | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGGAGGGGACTGTAGAGAGG........................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGACTGTAGAGAGGAGGG.................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGAACTAGGAAGTAGCTCTGGG........................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGGGGACTGTAGAGAGGt....................................................................................... | 24 | t | 1.00 | 17.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTGCCTAACCTCTGTTCTGC................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................GCAGACAATGGGGGACtg..................................................................................................................................................................................................................................................................................................................................................... | 18 | tg | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGTGACCCGGCTctgt.................. | 19 | ctgt | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGATCCGCTGGCCCAGGTGACCCtt........................ | 27 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGGAGGGGACTGTAGAGA.......................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGGGGACTGTAGAGAGGAGGGT................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGGGGACTGTAGt............................................................................................ | 19 | t | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTCTGCTCACCCTTCa....................................................... | 20 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGGGGACTGTAG............................................................................................. | 18 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTCTGCTCACCCTTCTCt..................................................... | 22 | t | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTTTGGAACgcga........................................................................................................................................................ | 16 | gcga | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGGGGACTGTAGAGAGt........................................................................................ | 23 | t | 1.00 | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................CCGGAGAGCCTGTACAGCGTGGCTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| .....................................................................................................................................................................................TGAGGTGGCTTTTGCTGGATTTTG........................................................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTCTGCTCACCCTTCTC...................................................... | 21 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACATCTCCTAGAG | 16 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - |
| CGTGCACGGTGCCCCCCCGGAGAGCCTGTACAGCGTGGCTGGGAACCCAGGTGCTTTCTCGTTCTGTTCTTACCCCTGCCTCATCCCTGTCCCTATGTCACATTGCACTGTCCCCTCTTCTCTGAATGCCCTCACTTACCAGCTTATATTGCCCTGTGGGGTTGGGGCTGTGAGGTGGCTATGAGGTGGCTTTTGCTGGATTTTGCCAAGGTTCTTTAGAAGCAGGAAGCAGTATGGGTCAGCAGACAATGGGGGACATGAGAGGTGACTCTAGGGGACACCATTGTTGTCTTAGGAAGAGTCCTGAGCAGAGTCAGGGCCATGGGTATGTGACTAAATAGGCTCTCCTTTCCAGTGTGTAGCTTGTGCACAGCCTACCCCTTCTTCCCCATCAAGCTTATGAGGGCAGGGACCCATCACTGTCTGTCTGTTAGGGTTTGGAACTAGGAAGTAGCTCTGGGTTGGGGCCCCAGCTTATTAAGGCATTGGTGTGGGAGGGGACTGTAGAGAGGAGGGTGCCTAACCTCTGTTCTGCTCACCCTTCTCACAGTGGATCCGCTGGCCCAGGTGACCCGGCTATTCCGTGAACATCTCCTAGAG .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................(((.((((((((....))))))))....))).....(((((((((((...((((((.(((((........))))).))))))...)))))))))))................................................... ..................................................................................................................................................................................................................................................................................................................................................................................................................................................................451................................................................................................550................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT4() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesWT1() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR037897(GSM510433) ovary_rep2. (ovary) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTGTAGAGAgacg.......................................................................................... | 16 | gacg | 7.00 | 0.00 | - | - | 3.00 | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGGTGACCCGGCTATTCCGTGAA............ | 27 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................AATGCCCTCACTTAggct.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 18 | ggct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................GACTCTAGGGGACgcca................................................................................................................................................................................................................................................................................................................................. | 17 | gcca | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................CTCGTTCTGTTCTTACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 17 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |