| Gene: Ddx56 | ID: uc007hyc.1_intron_1_0_chr11_6159624_r.3p | SPECIES: mm9 |
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(3) OTHER.mut |
(4) PIWI.ip |
(1) PIWI.mut |
(24) TESTES |
| CTCCTGCCTCTGCCTCCTGATTACTGGGATTAAATGTGTGCACCACCACTGCTAGACTGAATTGGAGTCTGTGCTGTAAGTGTACAGAGTAATGCTGAGAAGGGAGTGGCCAGCACTGAAAGCCAGGTCTCACGCTATAGAGAGAACTGTGTAGCTGAAGTAGGGGTGAGGCCATCCCTGAGGCCCAGCATCTCTTCCAGTTCCTGCTGCTCTTCGTGGCCTTGTACATCCTCGAAAGAAACGGAGAAAG .....................................................................(((((.......)))))......((((((((..((((((.....)))).....))...))))..((((((.((....)).))))))...))))........................................................................................ .....................................................................70.................................................................................................169............................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT4() Testes Data. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR042485(GSM539877) mouse testicular tissue [09-002]. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................GAGAGAACTGTGTAGCTGAAGTAGGG..................................................................................... | 26 | 1 | 23.00 | 23.00 | 6.00 | 6.00 | 1.00 | 4.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - |
| .........................................................................................................................................TAGAGAGAACTGTGTAGCTGAAGTAGG...................................................................................... | 27 | 1 | 23.00 | 23.00 | 2.00 | 5.00 | 2.00 | 6.00 | 1.00 | 1.00 | - | - | 1.00 | 1.00 | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................TGGCCTTGTACATCCTCGAAAGAAACGG...... | 28 | 1 | 20.00 | 20.00 | 7.00 | 2.00 | 6.00 | 3.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................GAGAGAACTGTGTAGCTGAAGTAGG...................................................................................... | 25 | 1 | 16.00 | 16.00 | - | 4.00 | 3.00 | 1.00 | 1.00 | - | - | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................AGAGAACTGTGTAGCTGAAGTAGGGG.................................................................................... | 26 | 1 | 8.00 | 8.00 | 5.00 | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TAGAGAGAACTGTGTAGCTGAAGTAG....................................................................................... | 26 | 1 | 7.00 | 7.00 | 1.00 | - | - | - | 1.00 | 1.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - |
| .......................................................................................................................................TATAGAGAGAACTGTGTAGCTGAAGTAGG...................................................................................... | 29 | 1 | 5.00 | 5.00 | 1.00 | 1.00 | - | - | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................TATAGAGAGAACTGTGTAGCTGAAGT......................................................................................... | 26 | 1 | 4.00 | 4.00 | - | - | - | - | - | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TAGAGAGAACTGTGTAGCTGAAGTAGGG..................................................................................... | 28 | 1 | 4.00 | 4.00 | 2.00 | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................AGAGAACTGTGTAGCTGAAGTAGGGGT................................................................................... | 27 | 1 | 3.00 | 3.00 | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TAGAGAGAACTGTGTAGCTGAAGTA........................................................................................ | 25 | 1 | 3.00 | 3.00 | - | - | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................TATAGAGAGAACTGTGTAGCTGAAGTA........................................................................................ | 27 | 1 | 3.00 | 3.00 | - | - | - | - | 1.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................AGAGAACTGTGTAGCTGAAGTAGGG..................................................................................... | 25 | 1 | 3.00 | 3.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TGTACATCCTCGAAAGAAACGGAGAAA. | 27 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................TGGCCTTGTACATCCTCGAAAGAAACGGA..... | 29 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................AACTGTGTAGCTGAAGTAGGGGTGA................................................................................. | 25 | 1 | 2.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................GAGAGAACTGTGTAGCTGAAGTAGGGG.................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..................................................................................................................................................................................................TTCCAGTTCCTGCTGCTCTTCGTGGCC............................. | 27 | 1 | 2.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GAGAACTGTGTAGCTGAAGTAGGGGT................................................................................... | 26 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................GAACTGTGTAGCTGAAGTAGGGGTG.................................................................................. | 25 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................AGAACTGTGTAGCTGAAGTAGGGGTG.................................................................................. | 26 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................TGTAAGTGTACAGAGTAATGCTGAGA...................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................GTGGCCTTGTACATCCTCGAAAGAAA......... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................TAAGTGTACAGAGTAATGCTGAGAAGG................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................TGAGGCCCAGCATCTCTTCC.................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..............................................................................................................................................................................................TCTCTTCCAGTTCCTGCTGCTCTTCGT................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ............................................................ATTGGAGTCTGTGCTGTAAGTGTACA.................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TAGAGAGAACTGTGTAGCTGAAGTAGGa..................................................................................... | 28 | a | 1.00 | 23.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................CCACTGCTAGACTGAATTGGAGTCT.................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................GAGAGAACTGTGTAGCTGAAGTAGGGa.................................................................................... | 27 | a | 1.00 | 23.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................TGAATTGGAGTCTGTGCTGTAAGTGT....................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TGTACATCCTCGAAAGAAACGGAGAA.. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ................................................................................................................................................................................................................................TACATCCTCGAAAGAAACGGAGAAAGt | 27 | t | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................TTGTACATCCTCGAAAGAAACGGAG.... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................TGAAAGCCAGGTCTCACGCTATAGA............................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................GAGAGAACTGTGTAGCTGAAGTAGGt..................................................................................... | 26 | t | 1.00 | 16.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................TATAGAGAGAACTGTGTAGCTGAAG.......................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................AGAACTGTGTAGCTGAAGTAGGGGT................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................GACTGAATTGGAGTCTGTGCTGTAAGT......................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ............................ATTAAATGTGTGCgtga............................................................................................................................................................................................................. | 17 | gtga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................GAGAACTGTGTAGCTGAAGTAGGGG.................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................TGTGCTGTAAGTGTACAGAGTAATtct.......................................................................................................................................................... | 27 | tct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................AGAGAGAACTGTGTAGCTGAAGTAGGt..................................................................................... | 27 | t | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................AGAGAGAACTGTGTAGCTGAAGTAGGG..................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................TGTGTAGCTGAAGTAGGGGTGAGGCCA............................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................TTGTACATCCTCGAAAGAAACGGAGAAA. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TGTACATCCTCGAAAGAAACGGAGAAAG | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................ACCACCACTGCTAGACTGAATTGGAG....................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................AACTGTGTAGCTGAAGTAGGGGTGAGGCC............................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................TATAGAGAGAACTGTGTAGCTGAAGTAGt...................................................................................... | 29 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................AGAGAGAACTGTGTAGCTGAAGTAGG...................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................TGAGAAGGGAGTGGCCAGCACTGAAA................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................TGGGATTAAATGTGTGCACCACCACTGC...................................................................................................................................................................................................... | 28 | 13 | 0.23 | 0.23 | - | - | - | - | 0.08 | 0.08 | - | - | - | - | - | - | - | 0.08 | - | - | - | - | - | - | - | - | - | - |
| ........................TGGGATTAAATGTGTGCACCACCACTGta..................................................................................................................................................................................................... | 29 | ta | 0.08 | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.08 |
| ........................TGGGATTAAATGTGTGCACCACCACTG....................................................................................................................................................................................................... | 27 | 13 | 0.08 | 0.08 | - | - | - | - | - | - | - | - | - | - | - | 0.08 | - | - | - | - | - | - | - | - | - | - | - | - |
| CTCCTGCCTCTGCCTCCTGATTACTGGGATTAAATGTGTGCACCACCACTGCTAGACTGAATTGGAGTCTGTGCTGTAAGTGTACAGAGTAATGCTGAGAAGGGAGTGGCCAGCACTGAAAGCCAGGTCTCACGCTATAGAGAGAACTGTGTAGCTGAAGTAGGGGTGAGGCCATCCCTGAGGCCCAGCATCTCTTCCAGTTCCTGCTGCTCTTCGTGGCCTTGTACATCCTCGAAAGAAACGGAGAAAG .....................................................................(((((.......)))))......((((((((..((((((.....)))).....))...))))..((((((.((....)).))))))...))))........................................................................................ .....................................................................70.................................................................................................169............................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT1() Testes Data. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesWT4() Testes Data. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes) | SRR042485(GSM539877) mouse testicular tissue [09-002]. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR363956(GSM822758) P14-WTSmall RNA Miwi IPread_length: 36. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................GCTGCTCTTCGTGGCCTTGTACATCCT.................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..................TACTGGGATTAAATGTGTGCACCAgtt............................................................................................................................................................................................................. | 27 | gtt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |