(5)
OTHER.mut
(1)
OVARY
(3)
PIWI.ip
(3)
PIWI.mut
(24)
TESTES

Sense strand
TAACCGGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGAGGACGCGGTGGACTGGGGTAAGAGCAAAACCTTTTCTCCTTTTATCTAATTTTGTTTCATCCATAGGATTTTCAATGGAAAGAAGGGACTGAAAGACATAAGAAATTTATCCCACATTTCCATGGACAATCTATTGCGGTCAAGCTATCTCCTAAAACATGGAAATGTCATTTAAGTGGCAGTTTG
..........................................................(((.((((......((((..((((.(((((......))))))))).....))))......)))).))).(((..(((((........)))))..)))...............................................................................................
..........................................................59.................................................................................................................174..........................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT1()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
...............................................................AGGACGCGGTGGACTGGG......................................................................................................................................................................... 18 1 42.00 42.00 18.00 5.00 4.00 2.00 2.00 2.00 1.00 - 3.00 2.00 - 1.00 - 2.00 - - - - - - - - - - -
................................................................GGACGCGGTGGACTGGG......................................................................................................................................................................... 17 1 21.00 21.00 6.00 8.00 - 2.00 - - 2.00 - - 1.00 - - 2.00 - - - - - - - - - - - -
.......................GATTTGATCGTGGAGGCATGAGCAG.......................................................................................................................................................................................................... 25 2 4.00 4.00 4.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................GACGCGGTGGACTGGG......................................................................................................................................................................... 16 1 3.00 3.00 - - - 3.00 - - - - - - - - - - - - - - - - - - - - -
................................GTGGAGGCATGAGCAGAGG....................................................................................................................................................................................................... 19 2 3.00 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................................................GAGGACGCGGTGGACTGGG......................................................................................................................................................................... 19 1 3.00 3.00 - 3.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................GAAAGAAGGGACTGAAAGACATAAGAAAT................................................................................ 29 1 2.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
...............................................................AGGACGCGGTGGACTGGGcgc...................................................................................................................................................................... 21 cgc 2.00 42.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
............................................................AGGAGGACGCGGTGGACTGGGcgct..................................................................................................................................................................... 25 cgct 2.00 0.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................GCGGGGAGGAGGACGCGGTGGACTGGGGa....................................................................................................................................................................... 29 a 2.00 0.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - -
................................................................GGACGCGGTGGACTGGGa........................................................................................................................................................................ 18 a 2.00 21.00 - - - - - - 1.00 - - - - - - 1.00 - - - - - - - - - - -
.........................................................................................................................................AATGGAAAGAAGGGACT................................................................................................ 17 3 1.67 1.67 - - - - 1.67 - - - - - - - - - - - - - - - - - - - -
.....................GGGATTTGATCGTGGAGGCATGAGC............................................................................................................................................................................................................ 25 2 1.50 1.50 - - - - - - - - - - - - - - - - - 1.50 - - - - - - -
......................GGATTTGATCGTGGAGGCATGAGCAG.......................................................................................................................................................................................................... 26 2 1.50 1.50 - - - - - - - - - - - - - - - - 0.50 - 0.50 - - - 0.50 - -
.........................TTTGATCGTGGAGGCATGAGCA........................................................................................................................................................................................................... 22 2 1.50 1.50 1.50 - - - - - - - - - - - - - - - - - - - - - - - -
............................GATCGTGGAGGCATGAGCAGAG........................................................................................................................................................................................................ 22 2 1.50 1.50 - - - 1.50 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................AATGGAAAGAAGGGACTGAAAGACATAAGAAAT................................................................................ 33 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..........................................................GGAGGAGGACGCGGTGGACT............................................................................................................................................................................ 20 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
........................................................................................................................................................................................CATGGACAATCTATTGCGGTCAAGCT........................................ 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
.........................................................................................................................................AATGGAAAGAAGGGACTGAAAG........................................................................................... 22 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................AATGGAAAGAAGGGACTGAAAGACA........................................................................................ 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
............................................................AGGAGGACGCGGTGGACTGGGGTAAGAGCAA............................................................................................................................................................... 31 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................ATGGAAATGTCATTTAAGTGGCAGT... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
..............................................................................................................................................AAAGAAGGGACTGAAAGACATAAGAA.................................................................................. 26 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................................................GGTGGACTGGGGTAAGAGCA................................................................................................................................................................ 20 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................................................................................................AGGGACTGAAAGACATAAGA................................................................................... 20 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................AGAAGGGACTGAAAGACA........................................................................................ 18 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.....................................................................................................................................TTTCAATGGAAAGAAGGGACTGAAAGA.......................................................................................... 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................GCATGAGCAGAGGTGGGCGGGGAGGAtt........................................................................................................................................................................................ 28 tt 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.....................................................................CGGTGGACTGGGGTAAGA................................................................................................................................................................... 18 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
..........................................................................................................................................ATGGAAAGAAGGGACTGAAAGACATAAGA................................................................................... 29 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................................................................CAATGGAAAGAAGGGACTGAAAGACA........................................................................................ 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................................CGCGGTGGACTGGGGTAAGAGCA................................................................................................................................................................ 23 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
........................ATTTGATCGTGGAGGCATGAG............................................................................................................................................................................................................. 21 2 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................TAGGATTTTCAATGGAAAGAAGGGAC................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
..ACCGGGGCAGGGGAAGAGGGGGATat.............................................................................................................................................................................................................................. 26 at 1.00 0.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
...........................................................................................................................................TGGAAAGAAGGGACTGAAAGACA........................................................................................ 23 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.........................................................................................................................................................TGAAAGACATAAGAAATTTATCCCACATT.................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
........................................................................................................................................................................................................................TAAAACATGGAAATGTCATTTAAGTGGC...... 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.......................................................CGGGGAGGAGGACGCGGTGGACTGGG......................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
......................GGATTTGATCGTGGAGGCATG............................................................................................................................................................................................................... 21 2 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
........................ATTTGATCGTGGAGGCATGAGC............................................................................................................................................................................................................ 22 2 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................GGGGATTTGATCGTGGAGGCATGAG............................................................................................................................................................................................................. 25 2 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
...................................................................................................................................ATTTTCAATGGAAAGAAGGGACTGAAA............................................................................................ 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................TTTTCAATGGAAAGAAGGGACTGAAAGA.......................................................................................... 28 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..............................................................................................................................................AAAGAAGGGACTGAAAGACATAAGA................................................................................... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................................AGGTGGGCGGGGAGGAGGACGCGGTGGACT............................................................................................................................................................................ 30 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.......................GATTTGATCGTGGAGGC.................................................................................................................................................................................................................. 17 2 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................AAGAAGGGACTGAAAGACATAAGAAAT................................................................................ 27 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..........................................................GGAGGAGGACGCGGTGGACTGGGGTA...................................................................................................................................................................... 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................TGATCGTGGAGGCATGAGCAGAGGTG..................................................................................................................................................................................................... 26 2 1.00 1.00 - - - - - - - - - - - - - - - - - 0.50 - - - - - 0.50 -
....................................................................................................................................................GGGACTGAAAGACATAAGAAATTTA............................................................................. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................TTTGATCGTGGAGGCATGAGCAGAGG....................................................................................................................................................................................................... 26 2 0.50 0.50 - - - - - - - - - - - - - - - 0.50 - - - - - - - - -
..................AGGGGGATTTGATCGTGGAGGCATGA.............................................................................................................................................................................................................. 26 2 0.50 0.50 - - - - - 0.50 - - - - - - - - - - - - - - - - - - -
.........................TTTGATCGTGGAGGCATGA.............................................................................................................................................................................................................. 19 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
......................GGATTTGATCGTGGAGGCATGAG............................................................................................................................................................................................................. 23 2 0.50 0.50 - - - - - - - - - - 0.50 - - - - - - - - - - - - - -
..........................TTGATCGTGGAGGCATGAGCAGAGGT...................................................................................................................................................................................................... 26 2 0.50 0.50 - - - - - - - - - - - - - - 0.50 - - - - - - - - - -
........................ATTTGATCGTGGAGGCATGAGCAGAGG....................................................................................................................................................................................................... 27 2 0.50 0.50 - - - - - - - 0.50 - - - - - - - - - - - - - - - - -
......................GGATTTGATCGTGGAGGCATGAGCA........................................................................................................................................................................................................... 25 2 0.50 0.50 - - - - - - - - - - - - - - - - 0.50 - - - - - - - -
............GGGAAGAGGGGGATTTGATCGTGGAGGCAT................................................................................................................................................................................................................ 30 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
..............................................AGAGGTGGGCGGGGAGGAGGACG..................................................................................................................................................................................... 23 2 0.50 0.50 - - - - - - - - 0.50 - - - - - - - - - - - - - - - -
.........................TTTGATCGTGGAGGCATGAG............................................................................................................................................................................................................. 20 2 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - -
.............................ATCGTGGAGGCATGAGCAGAGGTGG.................................................................................................................................................................................................... 25 2 0.50 0.50 - - - - - - - - - - - - - - 0.50 - - - - - - - - - -
...............AAGAGGGGGATTTGATCGTGGAGG................................................................................................................................................................................................................... 24 2 0.50 0.50 - - - - - - - - - 0.50 - - - - - - - - - - - - - - -
...........GGGGAAGAGGGGGATTTGATCGTGG...................................................................................................................................................................................................................... 25 3 0.33 0.33 - - - - - - - - - - - - - - - 0.33 - - - - - - - - -
............GGGAAGAGGGGGATTTGATCGTGG...................................................................................................................................................................................................................... 24 3 0.33 0.33 - - - - - - - - - - - - - - - 0.33 - - - - - - - - -
.........................................................................................................................................AATGGAAAGAAGGGACTG............................................................................................... 18 3 0.33 0.33 - - - - - - - - - - - - - - - - - - - - - - - - 0.33
............GGGAAGAGGGGGATTTGATCGTGGA..................................................................................................................................................................................................................... 25 3 0.33 0.33 - - - - - - - - - - - - - - - 0.33 - - - - - - - - -
.................................TGGAGGCATGAGCAGAG........................................................................................................................................................................................................ 17 4 0.25 0.25 - - - 0.25 - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................GGGACTGAAAGACAT....................................................................................... 15 9 0.11 0.11 - - - - - - 0.11 - - - - - - - - - - - - - - - - - -
................................................AGGTGGGCGGGGAGG........................................................................................................................................................................................... 15 16 0.06 0.06 - - - - - - - - - - - - 0.06 - - - - - - - - - - - -

Antisense strand
TAACCGGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCAGAGGTGGGCGGGGAGGAGGACGCGGTGGACTGGGGTAAGAGCAAAACCTTTTCTCCTTTTATCTAATTTTGTTTCATCCATAGGATTTTCAATGGAAAGAAGGGACTGAAAGACATAAGAAATTTATCCCACATTTCCATGGACAATCTATTGCGGTCAAGCTATCTCCTAAAACATGGAAATGTCATTTAAGTGGCAGTTTG
..........................................................(((.((((......((((..((((.(((((......))))))))).....))))......)))).))).(((..(((((........)))))..)))...............................................................................................
..........................................................59.................................................................................................................174..........................................................................
Size Perfect hit Total Norm Perfect Norm mjTestesWT1()
Testes Data. (testes)
mjTestesWT4()
Testes Data. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR028731(GSM400968)
Mili-wt-associated. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)