(1)
OTHER.ip
(3)
OTHER.mut
(1)
OVARY
(5)
PIWI.ip
(2)
PIWI.mut
(24)
TESTES

Sense strand
CTGCTTAGCCTATGGGCAGGATGGCCCCTGGGTTTGGTTGTGGGTTTCCCTTCCTGGAAAGCCTTTCCGATCGATGGACAGACAGTCTGGAGTTTGTGAAAAGACGAGCAGGCTGCGATAACGACCTCGGGGTAGAGGGACACAGCGAGAAGCAGGCTGGCACTGACAACTCCTGTTGCCCCCCCCCCCCACACTTGCAGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGATCA
...................................................((((((((.....)))))......)))....(((((((..((((......))))...))))))).......................................................................................................................................
..................................................51.....................................................................122..............................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
......................................................TGGAAAGCCTTTCCGATCGATGGACAGA........................................................................................................................................................................ 28 1 24.00 24.00 12.00 8.00 4.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................TGGAAAGCCTTTCCGATCGATGGACA.......................................................................................................................................................................... 26 1 11.00 11.00 1.00 5.00 4.00 - - - - - - - - 1.00 - - - - - - - - - - - - -
...................................................TCCTGGAAAGCCTTTCCGATCGATGGAC........................................................................................................................................................................... 28 1 8.00 8.00 2.00 2.00 3.00 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................TGAAAAGACGAGCAGGCTGCGATAAC................................................................................................................................ 26 1 8.00 8.00 5.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................TTCCTGGAAAGCCTTTCCGATCGATGGAC........................................................................................................................................................................... 29 1 8.00 8.00 3.00 3.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TGGACTGTGTACCCTTGGTGGAGGTGG............... 27 1 7.00 7.00 1.00 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................TGGAGTTTGTGAAAAGACGAGCAGGCT........................................................................................................................................ 27 1 7.00 7.00 2.00 - 1.00 1.00 - 1.00 1.00 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TGGTGGACTGTGTACCCTTGGTGGAGGT................. 28 1 7.00 7.00 1.00 - 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TGGACTGTGTACCCTTGGTGGAGGTGGA.............. 28 1 7.00 7.00 3.00 1.00 - 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TTGCAGGATGCTGGTGGACTGTGTAC.............................. 26 1 6.00 6.00 2.00 1.00 2.00 - - - - - 1.00 - - - - - - - - - - - - - - - -
.......................................................................................TGGAGTTTGTGAAAAGACGAGCAGGC......................................................................................................................................... 26 1 4.00 4.00 - 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................TGTGAAAAGACGAGCAGGCTGCGATA.................................................................................................................................. 26 1 4.00 4.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TGGTGGACTGTGTACCCTTGGTGGAGG.................. 27 1 4.00 4.00 - - 2.00 - - - 1.00 - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................TGTGAAAAGACGAGCAGGCTGCGATAA................................................................................................................................. 27 1 4.00 4.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................TGAAAAGACGAGCAGGCTGCGATAACG............................................................................................................................... 27 1 4.00 4.00 1.00 1.00 - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - -
......................................................TGGAAAGCCTTTCCGATCGATGGACAGAC....................................................................................................................................................................... 29 1 3.00 3.00 1.00 - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - -
................................................................................................TGAAAAGACGAGCAGGCTGCGATAACGAC............................................................................................................................. 29 1 3.00 3.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TTGCAGGATGCTGGTGGACTGTGTA............................... 25 1 2.00 2.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TGCTGGTGGACTGTGTACCCTTGGTGGA.................... 28 1 2.00 2.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................GTAGAGGGACACAGCGAGAAGCAGGCTGG.......................................................................................... 29 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - -
..................................................TTCCTGGAAAGCCTTTCCGATCGATGG............................................................................................................................................................................. 27 1 2.00 2.00 - 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................................TTGTGAAAAGACGAGCAGGCTGCGAT................................................................................................................................... 26 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
................................................................TTCCGATCGATGGACAGACAGTCTGG................................................................................................................................................................ 26 1 2.00 2.00 - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - -
.................................................................TCCGATCGATGGACAGACAGTCTGGAGT............................................................................................................................................................. 28 1 2.00 2.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TGGTGGACTGTGTACCCTTGGTGGAGGa................. 28 a 2.00 4.00 - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................TCCTGGAAAGCCTTTCCGATCGATGGACA.......................................................................................................................................................................... 29 1 2.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................CGATCGATGGACAGACAGT.................................................................................................................................................................... 19 1 2.00 2.00 - - - - - - - - - 2.00 - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TGGTGGACTGTGTACCCTTGGTGGAGGTt................ 29 t 2.00 7.00 - 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - -
..............................................................................................TGTGAAAAGACGAGCAGGCTGCGATAACt............................................................................................................................... 29 t 2.00 2.00 - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - -
..................................................TTCCTGGAAAGCCTTTCCGATCGATGGA............................................................................................................................................................................ 28 1 2.00 2.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - -
................................................................TTCCGATCGATGGACAGACAGTCTGGA............................................................................................................................................................... 27 1 2.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 -
..............................................................................................TGTGAAAAGACGAGCAGGCTGCGATAAC................................................................................................................................ 28 1 2.00 2.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TGCAGGATGCTGGTGGACTGTGTAC.............................. 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
.............................................................................................................................................................................................................TGGTGGACTGTGTACCCTTGGTGGAG................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................AGCAGGCTGGCACTGACAACTCCTGTTGC....................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
......................................................TGGAAAGCCTTTCCGATCGATGGACAGACA...................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00
..........................................................................TGGACAGACAGTCTGGAGTTTGTGAAA..................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................CAGGCTGCGATAACGACCTCGGGGTAGA.................................................................................................................. 28 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..................................TGGTTGTGGGTTTCgagt...................................................................................................................................................................................................... 18 gagt 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
..........................................................................TGGACAGACAGTCTGGAGTTTGTGAAAAGACG................................................................................................................................................ 32 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................GGATGCTGGTGGACTGTGTACCCTagg........................ 27 agg 1.00 0.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................GACAGTCTGGAGTTTGTGAAAAGACGt............................................................................................................................................... 27 t 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.....................................................CTGGAAAGCCTTTCCGATCGATGGACA.......................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.........................................................................................................................................GGACACAGCGAGAAGCAGGCTGGCACTGt.................................................................................... 29 t 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................................................TTCCTGGAAAGCCTTTCCGATCGATG.............................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.................................................................TCCGATCGATGGACAGACAGTCagca............................................................................................................................................................... 26 agca 1.00 0.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
................................................................................................TGAAAAGACGAGCAGGCTGCGATAACGACC............................................................................................................................ 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.......................................................................................................................................................................................................GGATGCTGGTGGACTGTGTACCCTTGGT....................... 28 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
..............................................................................................TGTGAAAAGACGAGCAGGCTGCGAT................................................................................................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TGGTGGACTGTGTACCCTTGGTGGAGttt................ 29 ttt 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................................GATGCTGGTGGACTGTGTACCCTTGG........................ 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TTGCAGGATGCTGGTGGACTGTGgacc............................. 27 gacc 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................GTGGACTGTGTACCCTTGGTGGAGGg................. 26 g 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TTGCAGGATGCTGGTGGACTGTGTACCC............................ 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................TGGAAAGCCTTTCCGATCGATGG............................................................................................................................................................................. 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.............................................................................................................................................................................................................TGGTGGACTGTGTACCCTTGGTGGAGGTG................ 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................TTGCAGGATGCTGGTGGACTGTGTACC............................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................GTAGAGGGACACAGCGAGAAGCAG............................................................................................... 24 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................TGGACTGTGTACCCTTGGTGGAGGTG................ 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................TTGTGAAAAGACGAGCAGGCTGCGATA.................................................................................................................................. 27 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.......................................................................................TGGAGTTTGTGAAAAGACGAGCAGGCTGC...................................................................................................................................... 29 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................TGCAGGATGCTGGTGGACTGTGTACCC............................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................CGATCGATGGACAGACAGTCTGG................................................................................................................................................................ 23 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
...........................................................................................................................................ACACAGCGAGAAGCAGGCTGGCAt....................................................................................... 24 t 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.................................................CTTCCTGGAAAGCCTTTCCGATCGATGGAC........................................................................................................................................................................... 30 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.......................................................GGAAAGCCTTTCCGATCGATGGACAG......................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................................................GGAAAGCCTTTCCGATCGATGGACAGA........................................................................................................................................................................ 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................TGTGAAAAGACGAGCAGGCTGCGATAACGt.............................................................................................................................. 30 t 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................................TGGAAAGCCTTTCCGATCGATGGACAG......................................................................................................................................................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................ATGCTGGTGGACTGTGTA............................... 18 2 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
......................................................TGGAAAGCCTTTCCGATCGATGGAC........................................................................................................................................................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................AGCGAGAAGCAGGCTGGCACTGACA.................................................................................. 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................GGATGCTGGTGGACTGTGTACCCTTGG........................ 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.............................................................................................TTGTGAAAAGACGAGCAGGCTGCGATAAC................................................................................................................................ 29 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................TGGTGGACTGTGTACCCTTGGTGGAGGTGG............... 30 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
............................................................................................................................................................................................................................CCTTGGTGGAGGTGGAGGACATGAT..... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
....................................................................................................AAGACGAGCAGGCTGCGATAACGACC............................................................................................................................ 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................CAGGATGCTGGTGGACTGTGTACC............................. 24 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
......................................................TGGAAAGCCTTTCCGATCGATGGACgga........................................................................................................................................................................ 28 gga 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................TGGTGGAGGTGGAGGACA......... 18 4 0.25 0.25 - - - - - - - - - - - - 0.25 - - - - - - - - - - - -

Antisense strand
CTGCTTAGCCTATGGGCAGGATGGCCCCTGGGTTTGGTTGTGGGTTTCCCTTCCTGGAAAGCCTTTCCGATCGATGGACAGACAGTCTGGAGTTTGTGAAAAGACGAGCAGGCTGCGATAACGACCTCGGGGTAGAGGGACACAGCGAGAAGCAGGCTGGCACTGACAACTCCTGTTGCCCCCCCCCCCCACACTTGCAGGATGCTGGTGGACTGTGTACCCTTGGTGGAGGTGGAGGACATGATGATCA
...................................................((((((((.....)))))......)))....(((((((..((((......))))...))))))).......................................................................................................................................
..................................................51.....................................................................122..............................................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
mjTestesWT2()
Testes Data. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
....................................................CCTGGAAAGCCTTTCCGATCGATGGA............................................................................................................................................................................ 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................................GTGGAGGTGGAGGAgatc........... 18 gatc 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - -