| Gene: Sfi1 | ID: uc007hrs.1_intron_20_0_chr11_3056868_r.5p | SPECIES: mm9 |
|
|
(7) OTHER.mut |
(2) PIWI.ip |
(19) TESTES |
| AGGCTGCCCAGCGCGAGGCAGCAGCTGAACACCGCCAGCACTACCTGCTGGTAAGAGCCTGGGGCAGCTGCGGAGGCGCGCGCTCAGGGCTCCTGCGCTCAGGGCTCCTGCGCCATAGCCCCTGAGTGGAGCAGTTCTCAGTTAGCTGTAGTCTGTGCTTGCATTTTGAAGCTGAGAAAGTAATGAGTAAAGTCAGAGATTTGGAGTTGAAAGGGGAACTGACCCTGGGTCTTTACACAGTAGACCTCTT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT3() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................TAGCTGTAGTCTGTGCTTGCATTTTGA................................................................................. | 27 | 1 | 4.00 | 4.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TAGTCTGTGCTTGCATTTTGAAGCTGA........................................................................... | 27 | 1 | 4.00 | 4.00 | - | - | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................TGTGCTTGCATTTTGAAGCTGAGAAAG...................................................................... | 27 | 1 | 3.00 | 3.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................TGTAGTCTGTGCTTGCATTTTGAAGC.............................................................................. | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TAGTCTGTGCTTGCATTTTGAAGCTGAG.......................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ....................................AGCACTACCTGCTGGTAAGAGCCTGGGGCA........................................................................................................................................................................................ | 30 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................GAGAAAGTAATGAGTAAAGTCAGAGA................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 |
| .....................................................................................................................................GTTCTCAGTTAGCTGTAGTC................................................................................................. | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TAGTCTGTGCTTGCATTTTGAAGC.............................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................TGTGCTTGCATTTTGAAGCTGAGttag...................................................................... | 27 | ttag | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................TGAAGCTGAGAAAGTAATGAGTAAAGTC........................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................GCTGGTAAGAGCCTGacc.......................................................................................................................................................................................... | 18 | acc | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................TGTAGTCTGTGCTTGCATTTTGAAG............................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .........................................................................................................................................................TGTGCTTGCATTTTGAAGCTGAGAAA....................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................TGTAGTCTGTGCTTGCATTTTGAAGCT............................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TGAGTAAAGTCAGAGATTTGGA............................................. | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .............................................TGCTGGTAAGAGCCTGacc.......................................................................................................................................................................................... | 19 | acc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ................................................TGGTAAGAGCCTGGGGCAGCTGCGGA................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................GCTGGTAAGAGCCTGac........................................................................................................................................................................................... | 17 | ac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .............................................TGCTGGTAAGAGCCTGGGGCAGCTGCG.................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................TGCTGGTAAGAGCCTGGGGCAGCTG.................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................TGTGCTTGCATTTTGAAGCTGAGtaag...................................................................... | 27 | taag | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................TGGTAAGAGCCTGGGcag........................................................................................................................................................................................ | 18 | cag | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................TAGCTGTAGTCTGTGCTTG......................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| AGGCTGCCCAGCGCGAGGCAGCAGCTGAACACCGCCAGCACTACCTGCTGGTAAGAGCCTGGGGCAGCTGCGGAGGCGCGCGCTCAGGGCTCCTGCGCTCAGGGCTCCTGCGCCATAGCCCCTGAGTGGAGCAGTTCTCAGTTAGCTGTAGTCTGTGCTTGCATTTTGAAGCTGAGAAAGTAATGAGTAAAGTCAGAGATTTGGAGTTGAAAGGGGAACTGACCCTGGGTCTTTACACAGTAGACCTCTT |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesWT3() Testes Data. (testes) | mjTestesWT1() Testes Data. (testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT4() Testes Data. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR037901(GSM510437) testes_rep2. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | SRR037902(GSM510438) testes_rep3. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................CTGCGCCATAGCCCCc................................................................................................................................ | 16 | c | 20.00 | 0.00 | 18.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................AGTCTGTGCTTGCATTTTGAAGCTGAGAAAGTAA................................................................... | 34 | 1 | 8.00 | 8.00 | - | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................CTGCGCCATAGCCCCctg................................................................................................................................ | 18 | ctg | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TGCGCTCAGGGCTCCTGCGCCATAtgc..................................................................................................................................... | 27 | tgc | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........GAGGCAGCAGCTGAAaat............................................................................................................................................................................................................................. | 18 | aat | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................GCCATAGCCCCTGAGTGGAGCAGTTCTCAGTTA.......................................................................................................... | 33 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................AGTCTGTGCTTGCATTTTGAAGCTGAGAAA....................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................TGCGCTCAGGGCTCCTGCGCCAtgc....................................................................................................................................... | 25 | tgc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...........................................................................................TGCGCTCAGGGCTCCTGCGCCAtg....................................................................................................................................... | 24 | tg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................AGTTAGCTGTAGTCTGTtc.............................................................................................. | 19 | tc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |