| Gene: Dnajc14 | ID: uc007hok.1_intron_0_0_chr10_128242740_f | SPECIES: mm9 |
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(4) OTHER.mut |
(5) PIWI.ip |
(1) PIWI.mut |
(21) TESTES |
| TGGCCTCAGGCGCAGCTGCTTGAGGAGGGAGGAGTTACCGCTGCTGCTCGGTACGTCGCCTTCGCCCCTGGTACCCCGTCGGTGGGTTCTCGGGTAATCTTTTGCAGGGGCACCTCGAAGCTCCGCCCTCAGCTTTTCCTCTAGCCCTGCACGGTCCCCACCCTTTTCTGACAGATTGCGGCCTCCCTCTTTCAGGCAGTCTTTTTTTTTTTTCCTAAGAGTTACCCCCCCACCCCCCCGCCGCCCCGACCACACCCTTTGCGGCACCCCCCCTCCCCCCCATTTCTCAGATTGAAGATTGTTAGCTTCTTGGAGGAAGAAGAAAAAAAAATTAAGATTTCGGGAGTAAGGGGGTTTCTGAGGTCCGGGTTGGTGCAAGCAGGTTTGTGGTCTGCCTAACTCACGTTTATTGTTAGGGATAGCGAATTTGAGCTAACACTGCCTGGGGAGTGGGTACATTGAATATGTCATTTTGAGATTGTTTAACTCTTGGTTCTATCCTTGACCATTCCCAACTTGATATCTTTGTTACAGGCAATGATGGCAGTGACCTAAAATCCTCAGGAAGCCCGGGGTCATGGCCC ................................................................................................................................................................................................................................................................................................(((((...((((.((..((((((.....))))))..))...))))..)))))((((((........))))))................................................................................................................................................................................................................................ ..............................................................................................................................................................................................................................................................................................287......................................................................360.............................................................................................................................................................................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGTGACCTAAAATCCTCAGGAAGC............... | 28 | 1 | 7.00 | 7.00 | 2.00 | 2.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCAGTGACCTAAAATCCTCAGG................... | 27 | 1 | 7.00 | 7.00 | 1.00 | - | 4.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................TTAAGATTTCGGGAGTAAGGGGGTT.................................................................................................................................................................................................................................... | 25 | 1 | 6.00 | 6.00 | - | - | 2.00 | 1.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGACCTAAAATCCTCAGGAAGCCC............. | 27 | 1 | 2.00 | 2.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................TCTGAGGTCCGGGTTGGTGCAAGCAG.......................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................CTGCTCGGTACGTCGCCTTCtc....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 22 | tc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCAGTGACCTAAAATCCTCAa.................... | 26 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................TTGAAGATTGTTAGCTTCTTGGAGGA........................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................TCTCAGATTGAAGATTGTTAGCTTCT.................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................................................................................................................................................................................................................................TGAGGTCCGGGTTGGTGCAAGCAtt......................................................................................................................................................................................................... | 25 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................AGGGAGGAGTTACCGCTGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................AAAAAAATTAAGATTTCGGGAGTAAGGGGG...................................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTTGTTACAGGgaga............................................. | 18 | gaga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCTCAGGAAGCCCGGGGTCATGGCg. | 29 | g | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................AGGGAGGAGTTACCGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................TGCTTGAGGAGGGAGGAGTTACCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAATGATGGCAGTGACCTAAAATCCTC...................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................TTTCTCAGATTGAAGATTGTTAGCTTCT.................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATCCTCAGGAAGCCCGGGGT........ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................AGATTTCGGGAGTAAGGGGGTTTCT................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATCCTCAGGAAGCCCGGGGTCATGGC.. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGTGACCTAAAATCCTCAGGAAGt............... | 28 | t | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................TGACAGATTGCGGCCTCCCTtttt........................................................................................................................................................................................................................................................................................................................................................................................................ | 24 | tttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................TGACAGATTGCGGCCTCCCTCTTTC....................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................................TTAAGATTTCGGGAGTAAGGGGGTTT................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCAGTGACCTAAAATCCTCAG.................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................GATTTCGGGAGTAAGGGGGTTTCT................................................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................CCTAACTCACGTTTATTGTTAGGGA..................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ......................................................................................................................................................................TCTGACAGATTGCGGCCTCCCTCTT......................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCAGTGACCTAAAATCCTCAGt................... | 27 | t | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGCAGTGACCTAAAATCC........................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................TAAGATTTCGGGAGTAAGGGGGTTT................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTGTTTAACTCTTGGTTCTATCC................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATTGTTAGGGATAGCGAATTTGAGC....................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ......................................................................................................................................................................TCTGACAGATTGCGGCCTCCCTCTTa........................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | a | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................TACCGCTGCTGCTCGGTACGTCGCCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................TTTTCTGACAGATTGCGGCCTCCCTC........................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGACCTAAAATCCTCAGGAAGCCCGG........... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCCAACTTGATATCTTTGTTACAGGC................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TGGCCTCAGGCGCAGCTGCTTGAGGAGGGAGGAGTTACCGCTGCTGCTCGGTACGTCGCCTTCGCCCCTGGTACCCCGTCGGTGGGTTCTCGGGTAATCTTTTGCAGGGGCACCTCGAAGCTCCGCCCTCAGCTTTTCCTCTAGCCCTGCACGGTCCCCACCCTTTTCTGACAGATTGCGGCCTCCCTCTTTCAGGCAGTCTTTTTTTTTTTTCCTAAGAGTTACCCCCCCACCCCCCCGCCGCCCCGACCACACCCTTTGCGGCACCCCCCCTCCCCCCCATTTCTCAGATTGAAGATTGTTAGCTTCTTGGAGGAAGAAGAAAAAAAAATTAAGATTTCGGGAGTAAGGGGGTTTCTGAGGTCCGGGTTGGTGCAAGCAGGTTTGTGGTCTGCCTAACTCACGTTTATTGTTAGGGATAGCGAATTTGAGCTAACACTGCCTGGGGAGTGGGTACATTGAATATGTCATTTTGAGATTGTTTAACTCTTGGTTCTATCCTTGACCATTCCCAACTTGATATCTTTGTTACAGGCAATGATGGCAGTGACCTAAAATCCTCAGGAAGCCCGGGGTCATGGCCC ................................................................................................................................................................................................................................................................................................(((((...((((.((..((((((.....))))))..))...))))..)))))((((((........))))))................................................................................................................................................................................................................................ ..............................................................................................................................................................................................................................................................................................287......................................................................360.............................................................................................................................................................................................................................. |
Size | Perfect hit | Total Norm | Perfect Norm | SRR014236(GSM319960) 10 dpp total. (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | GSM475281(GSM475281) total RNA. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesWT2() Testes Data. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesWT1() Testes Data. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................................................................CCCCCACCCCCCCGCcc....................................................................................................................................................................................................................................................................................................................................................... | 17 | cc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...................................................................................................................................................................................................................CTAAGAGTTACCCCCctg................................................................................................................................................................................................................................................................................................................................................................... | 18 | ctg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................CCCCCACCCCCCCGCccg....................................................................................................................................................................................................................................................................................................................................................... | 18 | ccg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .........................................................................................................................................................................................................................TTACCCCCCCACCCaaaa............................................................................................................................................................................................................................................................................................................................................................. | 18 | aaaa | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................TAGCCCTGCACGGTaaaa............................................................................................................................................................................................................................................................................................................................................................................................................................................. | 18 | aaaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................AGGTCCGGGTTGGTGCAAGCAGG......................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |