(1)
OTHER.ip
(5)
OTHER.mut
(1)
OVARY
(6)
PIWI.ip
(1)
PIWI.mut
(1)
TDRD1.ip
(29)
TESTES

Sense strand
ATTTACTTTTTTTTTTTTTAAGAAAGGAGAAAAGAAAAAACATCAAGAAAACTTAAAACCTTTCTTATGCCCTTTCTTTGGCTGTTCCTATTGTGGGATTTGGGTAGGGTGGGGCTGGTAAGGTCTGTTTCATGTGTTTCCTTTTCAGCATGAGCTCTGGTCTGATACCTGCTCTGACCCTCCCCTCCATCACCCTGCAGGAGCTTTGGCTGTGGCAGTCCAGCGTTGATGCCTGTGACCCATGAAGAAA
...............................................................................((..(((((......)))))..((.((((((...(((((.((((................)))).)))))....)))))).)).....)).................................................................................
.........................................................................74...............................................................................................171.............................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
.........................................................................................................................................................................................TCCATCACCCTGCAGGAGCTTTGGCTG...................................... 27 1 121.00 121.00 50.00 33.00 22.00 14.00 - - - - - - - - - 1.00 - - 1.00 - - - - - - - - - - - - -
.........................................................................................................................................................................................TCCATCACCCTGCAGGAGCTTTGGCTGT..................................... 28 1 34.00 34.00 10.00 11.00 7.00 6.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................TCCATCACCCTGCAGGAGCTTTGGCT....................................... 26 1 17.00 17.00 5.00 4.00 2.00 3.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - 1.00 - -
....................................................................................TTCCTATTGTGGGATTTGGGTAGG.............................................................................................................................................. 24 1 5.00 5.00 - - - - - 5.00 - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................................CCATCACCCTGCAGGAGCTTTGGCTGT..................................... 27 1 3.00 3.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TCACCCTGCAGGAGCTTTGGCTGTGGC.................................. 27 1 3.00 3.00 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
........................................................................................................................................................................................CTCCATCACCCTGCAGGAGCTTTGGCTGT..................................... 29 1 3.00 3.00 - - - - - - - - - - - - - - - - - 2.00 - - - - - - - - - - 1.00 -
.........................................................................................................................................................................................TCCATCACCCTGCAGGAGCTTTGGCTGg..................................... 28 g 2.00 121.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................TTTCAGCATGAGCTCTGGTCTGATA................................................................................... 25 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................TGATACCTGCTCTGACCCTCCCCTC............................................................... 25 1 2.00 2.00 - - - - - - 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - -
..............................................................................................................................................................................................CACCCTGCAGGAGCTTTGGCTGTGGC.................................. 26 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................AAAGAAAAAACATCAAGAAAACTTAAAAC............................................................................................................................................................................................... 29 1 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - 1.00
..........................................................................................................................................................................................CCATCACCCTGCAGGAGCTTTGGCTG...................................... 26 1 2.00 2.00 - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TCACCCTGCAGGAGCTTTGGCTGTGGCA................................. 28 1 2.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................TCCATCACCCTGCAGGAGCTTTGGCggtt.................................... 29 ggtt 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................ATCACCCTGCAGGAGCTTTGGCTGTG.................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................GGTCTGTTTCATGTGTTTCCTTTTCAGC..................................................................................................... 28 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................TGGCTGTTCCTATTGTGGGATTTGGGT................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................AGAAAGGAGAAAAGAAAAAACATCAAGAA......................................................................................................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................TGTGTTTCCTTTTCAGCATGAGCTCTGGTC........................................................................................ 30 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TGGTAAGGTCTGTTTCATGTGTTTCCT............................................................................................................ 27 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................................AAAACCTTTCTTATGCCCTTTCTTTGGC........................................................................................................................................................................ 28 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.................................................................................................................................................CAGCATGAGCTCTGGTCTGATACCTGC.............................................................................. 27 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................TTTTCAGCATGAGCTCTGGTCTGATACC................................................................................. 28 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TCACCCTGCAGGAGCTTTGGCTGTtgg.................................. 27 tgg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................TCCTATTGTGGGATTTGGGTAGGGTG........................................................................................................................................... 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................................................................TTTGGCTGTTCCTATTGTGGGATTTGGGT................................................................................................................................................. 29 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TCTGATACCTGCTCTGACCCTC.................................................................... 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
.............................................................................................................................................................................................TCACCCTGCAGGAGCTTTGGCTGTGG................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
...............................................................................................................................TTTCATGTGTTTCCTTTTCAGCATGAGCT.............................................................................................. 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................GGTCTGTTTCATGTGTTTCCTTTTCA....................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...........................................................................................................................................CCTTTTCAGCATGAGCTCTGGTCTG...................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
................................................................................................................................................................................................CCCTGCAGGAGCTTTGGCTGTGGCAa................................ 26 a 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................CTCCATCACCCTGCAGGAGCTTTGGCT....................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................TATTGTGGGATTTGGGTAGGGTGata........................................................................................................................................ 26 ata 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
...................................................................................................................TGGTAAGGTCTGTTTCATGTGTTTCC............................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................TCACCCTGCAGGAGCTTTGGCTGTGGCAa................................ 29 a 1.00 2.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................TGGTAAGGTCTGTTTCATGTGTTTC.............................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
................................................................................................................................................................TCTGATACCTGCTCTGACCCTCCCCTC............................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................TTCCTTTTCAGCATGAGCTCTGGTCTG...................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
.......................................................................................................................................GTTTCCTTTTCAGCATGAGCTCTGGT......................................................................................... 26 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................GCGTTGATGCCTGTGACCCATGAA.... 24 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TGATGCCTGTGACCCATGAAGca. 23 ca 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................TTCCTATTGTGGGATTTGGGTAGGG............................................................................................................................................. 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..................TAAGAAAGGAGAAAAGAAAAAACAT............................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
.............................................................................................................................................................TGGTCTGATACCTGCTCTGACCCTCC................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
.........................................................................................................................................................................................TCCATCACCCTGCAGGAGCTTTGGCTa...................................... 27 a 1.00 17.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................TCTGATACCTGCTCTGACCCTCCCCTCCA............................................................. 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................TTCCTATTGTGGGATTaca................................................................................................................................................... 19 aca 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - -
.....................................................................................................................................................................TACCTGCTCTGACCCTCCCCTCCATC........................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.............TTTTTTAAGAAAGGAGAAAAGAAAAAAC................................................................................................................................................................................................................. 28 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................TGGTCTGATACCTGCTCTGAC........................................................................ 21 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................CCCTGCAGGAGCTTTGGCTGTGGC.................................. 24 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................TCCATCACCCTGCAGGAGCTTTGGCTt...................................... 27 t 1.00 17.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................TCCATCACCCTGCAGGAGCTTTGtttg...................................... 27 tttg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................TAAGAAAGGAGAAAAGAAAAAACATCAAGt.......................................................................................................................................................................................................... 30 t 1.00 0.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................TCCATCACCCTGCAGGAGCTTTGGC........................................ 25 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................................................................GCTCTGACCCTCCCCTCCATCACCCTGtt................................................... 29 tt 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -

Antisense strand
ATTTACTTTTTTTTTTTTTAAGAAAGGAGAAAAGAAAAAACATCAAGAAAACTTAAAACCTTTCTTATGCCCTTTCTTTGGCTGTTCCTATTGTGGGATTTGGGTAGGGTGGGGCTGGTAAGGTCTGTTTCATGTGTTTCCTTTTCAGCATGAGCTCTGGTCTGATACCTGCTCTGACCCTCCCCTCCATCACCCTGCAGGAGCTTTGGCTGTGGCAGTCCAGCGTTGATGCCTGTGACCCATGAAGAAA
...............................................................................((..(((((......)))))..((.((((((...(((((.((((................)))).)))))....)))))).)).....)).................................................................................
.........................................................................74...............................................................................................171.............................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)