| Gene: Shmt2 | ID: uc007hju.1_intron_9_0_chr10_126957474_r | SPECIES: mm9 | 
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  (1)  OTHER.ip  | 
  
  
  (7)  OTHER.mut  | 
  
  
  (7)  PIWI.ip  | 
  
  
  (1)  TDRD1.ip  | 
  
  
  (29)  TESTES  | 
  
  
| AGAGGGAGAAGGACAGACAGTGTCGCGGCCTGGAGCTCATCGCCTCAGAGGTAGGACGTGAGGATATGGGTCAAAGAGCGCGAGCTACGGTGCGCGCAGGGAACACCACGTCACCTGCGGTCACGGTAGTGACTTCTCCACGCCTCCCTGTCAGATTCAAAAGAGCTTTTTCCTGGGCCTTTTCCCTCTTCTCTATACTGTCCTCTGAAGCATAAGGCAGGACCAGTTTATGGGGCTTGAGCATTGGGAAGCTTCTAGAGCCATGTAGCGTCCTCATCTCTTCCTTAACCTCCTTCTCTCGTCAGAAGAAAGAGGAACCTGGAAGCACGGGTTGAGTGGACAGGCGGCCCTACTGGGGCCACCCGTCATGGCAGCCGAGTTTCTGAGAATGTTGCTTCTGGTCCCGCCCCATGTCTGGCGAGGAACACAGAGCCTTTGGCGTATCCCGTCTCACCCCTGCAGCCTGTGGGCTCTGGCAGGGGCGGGGCCGTGGGAATCCAGGGGAAGGGAGACCCCATTGCCTTCTGACACTGCCCCCCCACCACCCCAGAACTTCTGCAGCCGAGCTGCGCTGGAGGCCCTGGGGTCCTGTCTCAACAA ....................................................(((.((((..((....(((((...(((....)))((.(((..((((((..((.....))..))))))..))).))..)))))))..))))))).((((((......(((((.((((......)))))))))....((((...............)))).....))))))........................................................................................................................................................................................................................................................................................................................................................................................... ..............................................47.............................................................................................................................................................................222........................................................................................................................................................................................................................................................................................................................................................................................  | 
    Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes)  | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes)  | mjTestesWT2() Testes Data. (testes)  | mjTestesKO6() Testes Data. (Zcchc11 testes)  | mjTestesKO7() Testes Data. (Zcchc11 testes)  | mjTestesWT3() Testes Data. (testes)  | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes)  | mjTestesWT4() Testes Data. (testes)  | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes)  | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes)  | GSM509280(GSM509280) small RNA cloning by length. (testes)  | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)  | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes)  | mjTestesKO8() Testes Data. (Zcchc11 testes)  | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes)  | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes)  | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes)  | mjTestesKO5() Testes Data. (Zcchc11 testes)  | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes)  | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes)  | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes)  | SRR014229(GSM319953) 10 dpp MILI. (mili testes)  | GSM475280(GSM475280) Mili-IP. (mili testes)  | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes)  | SRR051941(GSM545785) 18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)  | mjTestesWT1() Testes Data. (testes)  | SRR014231(GSM319955) 16.5 dpc total. (testes)  | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes)  | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes)  | 
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................TAGGACGTGAGGATATGGGTCAAAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 9.00 | 9.00 | 3.00 | 4.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................................................................................................................................................................TCTATACTGTCCTCTGAAGCATAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 8.00 | 8.00 | 5.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCTCTGGCAGGtgc..................................................................................................................... | 18 | tgc | 6.00 | 0.00 | - | - | - | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................................................................................................................................................................................................................................................................................................TGGAAGCACGGGTTGAGTGGACAGGC............................................................................................................................................................................................................................................................... | 26 | 1 | 5.00 | 5.00 | 1.00 | - | - | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..................................................................TGGGTCAAAGAGCGCGAGCTACGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 26 | 1 | 4.00 | 4.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...................................................................................................................................................................................................TACTGTCCTCTGAAGCATAAGGCAGG........................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 4.00 | 4.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ................................................................TATGGGTCAAAGAGCGCGAGCTACGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 28 | 1 | 3.00 | 3.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ........................................................................................................................................................................................................................................................................................................TCTCGTCAGAAGAAAGAGGAACCTGGA..................................................................................................................................................................................................................................................................................... | 27 | 1 | 3.00 | 3.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..................................................................TGGGTCAAAGAGCGCGAGCTACGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 3.00 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..................................................GTAGGACGTGAGGATATGGGTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 24 | 1 | 3.00 | 3.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...........................................................................................................................................................................................................TCTGAAGCATAAGGCAGGACCAGTTT................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .............................................................................................................................................................................................................................................................................................................TCAGAAGAAAGAGGAACCTGGAAGC.................................................................................................................................................................................................................................................................................. | 25 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .......GAAGGACAGACAGTGTCGCGGCCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 
| ........................................................................................................................................................................................................................................................................................................TCTCGTCAGAAGAAAGAGGAACCTGG...................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..................................................................................................................................................................................................................................TTTATGGGGCTTGAGCATTGGG................................................................................................................................................................................................................................................................................................................................................................ | 22 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................................................................................................................................................................TCTATACTGTCCTCTGAAGCATAAGG............................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCTCTGGCAGGtg...................................................................................................................... | 17 | tg | 2.00 | 0.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...................................................TAGGACGTGAGGATATGGGTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ......AGAAGGACAGACAGTGTCGCGGCCTGtt...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | tt | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................................................................................................................................................................................................................................................................................AGAAGAAAGAGGAACCTGGAAGC.................................................................................................................................................................................................................................................................................. | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .............................................................................................................................................................................................................................................TGAGCATTGGGAAGCTTCTAGAGCCA................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...................................................................................................................................................................................................................................................................................................................GAAAGAGGAACCTGGAAGCACGGGTTGAG........................................................................................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................................................................................................................................................................................................................................................................................................................................................................TGAGAATGTTGCTTCTGGTCCCGCCCC.............................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...................................................TAGGACGTGAGGATATGGGTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ......................................................................................................................................................TCAGATTCAAAAGAGCTTTTTCCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ........................................................................................................................................................................................................................................................................................................TCTCGTCAGAAGAAAGAGGAACCTGGAAG................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCCTGTGGGCTCTGGCAGGGG...................................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ....................................................................................................................................................TGTCAGATTCAAAAGAGCTTTTTCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ................................................................TATGGGTCAAAGAGCGCGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...........................................................................................................................................................................................................TCTGAAGCATAAGGCAGGACCAGTTTA.................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .............................................................................................................................................................................................................................................................................................................TCAGAAGAAAGAGGAACCTGGAAGCA................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...........................................CTCAGAGGTAGGACGTGAGGATATGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...........................................CTCAGAGGTAGGACGTGAGGATATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .................................AGCTCATCGCCTCAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................................................................................................................................................................................................................................................................................................TGGAAGCACGGGTTGAGTGGACAGG................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTCTGCAGCCGAGCTGCGCTGG......................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ........................................................................................................................................................................................................................................................................................................TCTCGTCAGAAGAAAGAGGAACCTGGt..................................................................................................................................................................................................................................................................................... | 27 | t | 1.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...................................................................................................................................................................................................TACTGTCCTCTGAAGCATAAGGCAG............................................................................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCCTGTGGGCTCTGGCAGGGGCGG................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTCTGCAGCCGAGCTGCGCTGGA........................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ............................................................................................................................................................................................................CTGAAGCATAAGGCAGGACCAGTTTATGGt.............................................................................................................................................................................................................................................................................................................................................................................. | 30 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..................................................................................................................................................................................................................................................................................................................AGAAAGAGGAACCTGGAAGCACGG.............................................................................................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCCTGTGGGCTCTGGCAGGGGC..................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................GAGGTAGGACGTGAGGATATGGGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGAGGAACACAGAGCCTTTGGCGTA............................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...................................................................................................................................................................................................TACTGTCCTCTGAAGCATAAGGCAGGA.......................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ............................................TCAGAGGTAGGACGTGAGGATATGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...................................................................................................................................................................................................................................................................................................................GAAAGAGGAACCTGGAAGC.................................................................................................................................................................................................................................................................................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .............................................................................................................................................................................................TCTCTATACTGTCCTCTGAAGCATAAGG............................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ............................................................................................................................................................................................TTCTCTATACTGTCCTCTGAAGCATAAG................................................................................................................................................................................................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..........................................................................................................................................................................................................................................................................................................TCGTCAGAAGAAAGAGGAACCTGGAAGC.................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ....................................................................................................................................................................................................................TAAGGCAGGACCAGTTTATGGG.............................................................................................................................................................................................................................................................................................................................................................................. | 22 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..............................................................................................................................................................................................................................................................................................................................................................................CATGGCAGCCGAGcggt......................................................................................................................................................................................................................... | 17 | cggt | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCCTGTGGGCTCTGGCAGGa....................................................................................................................... | 24 | a | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................................................................................................................CTCCCTGTCAGATTCAAAAGAGCTTTTTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 
| .........................................................................................................................................................................................................................................................................................................CTCGTCAGAAGAAAGAGGAACCTGGAAG................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..................................................GTAGGACGTGAGGATATGGGTCAAt............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 25 | t | 1.00 | 3.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .GAGGGAGAAGGACAGACAGTGTCGCGGCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | 
| ........................................................CGTGAGGATATGGGTCAAAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCCGAGTTTCTGAGAATGTTGC............................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..............................................................................................................................................................................................................................................................................................................CAGAAGAAAGAGGAACCTGGAAGC.................................................................................................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..................................................................................................................................................................................................................................................................................................................AGAAAGAGGAACCTGGAAGCACGGGT............................................................................................................................................................................................................................................................................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGAGGAACACAGAGCCTTTGGCat.............................................................................................................................................................. | 27 | at | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..........GGACAGACAGTGTCGCGGCCTGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 
| ...................................................................................................................................................................................................................................................................................................................GAAAGAGGAACCTGGAAGCACGG.............................................................................................................................................................................................................................................................................. | 23 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .............................................................................................................................................................................................TCTCTATACTGTCCTCTGAAGCATAAG................................................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCCTGTGGGCTCTGGCAGa........................................................................................................................ | 23 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| AGAGGGAGAAGGACAGACAGTGTCGCGGCCTGGAGCTCATCGCCTCAGAGGTAGGACGTGAGGATATGGGTCAAAGAGCGCGAGCTACGGTGCGCGCAGGGAACACCACGTCACCTGCGGTCACGGTAGTGACTTCTCCACGCCTCCCTGTCAGATTCAAAAGAGCTTTTTCCTGGGCCTTTTCCCTCTTCTCTATACTGTCCTCTGAAGCATAAGGCAGGACCAGTTTATGGGGCTTGAGCATTGGGAAGCTTCTAGAGCCATGTAGCGTCCTCATCTCTTCCTTAACCTCCTTCTCTCGTCAGAAGAAAGAGGAACCTGGAAGCACGGGTTGAGTGGACAGGCGGCCCTACTGGGGCCACCCGTCATGGCAGCCGAGTTTCTGAGAATGTTGCTTCTGGTCCCGCCCCATGTCTGGCGAGGAACACAGAGCCTTTGGCGTATCCCGTCTCACCCCTGCAGCCTGTGGGCTCTGGCAGGGGCGGGGCCGTGGGAATCCAGGGGAAGGGAGACCCCATTGCCTTCTGACACTGCCCCCCCACCACCCCAGAACTTCTGCAGCCGAGCTGCGCTGGAGGCCCTGGGGTCCTGTCTCAACAA ....................................................(((.((((..((....(((((...(((....)))((.(((..((((((..((.....))..))))))..))).))..)))))))..))))))).((((((......(((((.((((......)))))))))....((((...............)))).....))))))........................................................................................................................................................................................................................................................................................................................................................................................... ..............................................47.............................................................................................................................................................................222........................................................................................................................................................................................................................................................................................................................................................................................  | 
    Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes)  | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes)  | mjTestesWT2() Testes Data. (testes)  | mjTestesKO6() Testes Data. (Zcchc11 testes)  | mjTestesKO7() Testes Data. (Zcchc11 testes)  | mjTestesWT3() Testes Data. (testes)  | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes)  | mjTestesWT4() Testes Data. (testes)  | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes)  | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes)  | GSM509280(GSM509280) small RNA cloning by length. (testes)  | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)  | SRR034120(GSM466730) Mili IP_Tdrd9-/- replicate1. (mili testes)  | mjTestesKO8() Testes Data. (Zcchc11 testes)  | GSM509275(GSM509275) MitoPLD+/+ E16.5 small RNA. (testes)  | SRR051939(GSM545783) Mov10L1-associated piRNAs. (mov10L testes)  | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes)  | mjTestesKO5() Testes Data. (Zcchc11 testes)  | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes)  | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes)  | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes)  | SRR014229(GSM319953) 10 dpp MILI. (mili testes)  | GSM475280(GSM475280) Mili-IP. (mili testes)  | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes)  | SRR051941(GSM545785) 18-32 nt total small RNAs (Mov10l-/-). (mov10L testes)  | mjTestesWT1() Testes Data. (testes)  | SRR014231(GSM319955) 16.5 dpc total. (testes)  | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes)  | GSM509279(GSM509279) MVH-/- E16.5 small RNA. (testes)  | 
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................TCCACGCCTCCCTGTCAGATTCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 9.00 | 9.00 | 2.00 | - | 1.00 | 1.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | 
| ........................................................................................................................................................................................................................................................................................TTCCTTAACCTCCTTCTCTCGTCAGA...................................................................................................................................................................................................................................................................................................... | 26 | 1 | 4.00 | 4.00 | 2.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ........................................................................................................................................TCCACGCCTCCCTGTCAGATTCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 3.00 | 3.00 | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..........................................................................................................................................CACGCCTCCCTGTCAGATTCAAAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ........................................................................................................................................TCCACGCCTCCCTGTCAGATTCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 24 | 1 | 2.00 | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .............................................................................................................................................GCCTCCCTGTCAGATTCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 20 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .............................................................................................................................................GCCTCCCTGTCAGATTCAAAAGAGCTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTCACCCCTGCAGCCTGT..................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..........................................................................................................................................................................................................................................................................................................................................................................CCGTCATGGCAGCCGAGTTTCTGA...................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...........................................................................................GCAGGGAACACCACttgt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | ttgt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | 
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................GAACACAGAGCCTTTGGCt................................................................................................................................................................ | 19 | t | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 
| ........................................................................................................................................................................................CCTCTTCTCTATACTGTCCTCTGAA....................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 
| ..........................................................................................................................................................................................................................................................................................................................................................................CCGTCATGGCAGCCGAGTTTCTGAGAA................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 
| ..........................................................................................................................................................................................................................................................GCTTCTAGAGCCATGTAGCGTCCTCA.................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .........................................................................................................................................CCACGCCTCCCTGTCAGATTCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ....................................................................................................................................TCTCCACGCCTCCCTGTCAGATTCAtt......................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................................................................................................AGTGACTTCTCCACGCCTCCCTGTCAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ......................................................................................................................................................................................................................................................................TGTAGCGTCCTCATCTCTTCCTTAa......................................................................................................................................................................................................................................................................................................................... | 25 | a | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...........................................................................................................................................................................................CTTCTCTATACTGTCCTCTGAAGCATA.................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ................................................................................................................................................................................GCCTTTTCCCTCTTCTCTATACTGTCCTC........................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..........................................................................................................................................CACGCCTCCCTGTCAGATTCAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...............................................................................................................................AGTGACTTCTCCACGCCTCCCTGTCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .....................................................................................................................................................................................................................................................................................TCTTCCTTAACCTCCTTCTCTCGTCAGAa...................................................................................................................................................................................................................................................................................................... | 29 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ......................................................................................................................................................................................................................................................................................TCTTCCTTAACCTCCTTCTCTCGTCAGA...................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ............................................................................................................................................................................................................................................................................................TTAACCTCCTTCTCTCGTCAGA...................................................................................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..........................................................................................................................................................................................................................................................................................................................................................................CCGTCATGGCAGCCGAGTTTCTGAGA.................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..............................................................................................................................................CCTCCCTGTCAGATTCAAAAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ...........................................................................................................................................................................................................................................................................................................................................................................CGTCATGGCAGCCGAGTTTCTGAGAA................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..........................................................................................................................................................................................TCTTCTCTATACTGTCCTCTGAAGCA.................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .......................................................................................................................................................................................CCCTCTTCTCTATACTGTCCTCTGA........................................................................................................................................................................................................................................................................................................................................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 
| ......................................................................................................................................TCTCCACGCCTCCCTGTCAGATTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .............................................................................................................................................GCCTCCCTGTCAGATTCAAAAGAGCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ........................................................................................................................................................................................................................................GGGCTTGAGCATTGGGAAGCTTCTA....................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 
| ..........................................................................................................................................................................................................................................................................................CCTTAACCTCCTTCTCTCGTCAGA...................................................................................................................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .........................................................................................................................................................................TTCCTGGGCCTTTTCCCTCTTCTCTA..................................................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ................................................................................................................................................................................CCTTTTCCCTCTTCTCTATACTGTCCTCt........................................................................................................................................................................................................................................................................................................................................................................................................... | 29 | t | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| .............................................................................................................................................................................................TCTCTATACTGTCCTCTGAAGCATA.................................................................................................................................................................................................................................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | 
| ........................................................................................................................................TCCACGCCTCCCTGTCAGATTCAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 
| ..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCCAGAACTTCaaaa............................................ | 18 | aaaa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 
| ............................................................................................................................................CGCCTCCCTGTCAGATTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |