uc007hju.1_intron_10_0_chr10_126958172

AAACTGCCCTTTGGATAATGATCTGAACCTTTGACTCTAGAACTTGCTATTCAAGATGAAAGTGGGGGTAGAGAGCACTGACTGCTGGCCGGACCAGGCTGCGTACTTAGCCAGAGGGCTCGATCTGTACCCATGACTGAGGGCAGCTGGGAGAAGAGATCTGGACAATTTTTAATTAACCCTGGCCTTTCTGCCCTGAGCCTCTGCAGAGATGTGGTCAGCTGGTCTGCATGGCTGCCCGGGCCCAGCA ........................................................(((((((...(((((..........)))))..(((((((.((((((...(((((.((..(((..((...))..))).)).))))).)))))).))........)))))...)))))))............................................................................ ..................................................51............................................................................................................................177.......................................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes)	SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes)	mjTestesWT4() Testes Data. (testes)	mjTestesWT1() Testes Data. (testes)	SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes)	SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes)	SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes)	SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes)	SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)	SRR014234(GSM319958) Ovary total. (ovary)	SRR014231(GSM319955) 16.5 dpc total. (testes)	SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes)	mjTestesWT2() Testes Data. (testes)	SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes)
.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAG..............................................................................................	23	1	7.00	7.00	-	-	7.00	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................TGGGAGAAGAGATCTGGACAATTTTT.............................................................................	26	1	6.00	6.00	2.00	4.00	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAG............................................................................................	25	1	6.00	6.00	3.00	2.00	-	-	-	1.00	-	-	-	-	-	-	-	-
...............................................TATTCAAGATGAAAGTGGGGGTAGAGA................................................................................................................................................................................	27	1	5.00	5.00	1.00	4.00	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................CATGACTGAGGGCAGCTGGGAGAAGAG............................................................................................	27	1	5.00	5.00	-	-	-	5.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGA...........................................................................................	26	1	4.00	4.00	3.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................TGACTGCTGGCCGGACCAGGC.......................................................................................................................................................	21	1	3.00	3.00	2.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................TGGGAGAAGAGATCTGGACAATTTT..............................................................................	25	1	3.00	3.00	1.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-
..................................................TCAAGATGAAAGTGGGGGTAGAGAGC..............................................................................................................................................................................	26	1	3.00	3.00	1.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................................................................................................TGAGCCTCTGCAGAGATGTGGTCAGC............................	26	1	2.00	2.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...................................................CAAGATGAAAGTGGGGGTAGA..................................................................................................................................................................................	21	1	2.00	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................TGAAAGTGGGGGTAGAGAGCACTGAC........................................................................................................................................................................	26	1	2.00	2.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGA.............................................................................................	24	1	2.00	2.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................................................TGCAGAGATGTGGTCAGCTGGTCTG.....................	25	1	2.00	2.00	-	-	-	-	-	-	-	-	-	1.00	1.00	-	-	-
............................................................................ACTGACTGCTGGCCGGACCAGGCTGC....................................................................................................................................................	26	1	2.00	2.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.................................................TTCAAGATGAAAGTGGGGGTAGAGAGC..............................................................................................................................................................................	27	1	2.00	2.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGt...........................................................................................	26	t	2.00	6.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................TGACTGCTGGCCGGACCAGGCTGC....................................................................................................................................................	24	1	2.00	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................................................AGAGATGTGGTCAGCTGGTCTGCATG.................	26	1	1.00	1.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-
........................................................................................................................................................GAAGAGATCTGGACAATTTTTAATTAA.......................................................................	27	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGATC.........................................................................................	28	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..................TGATCTGAACCTTTGACTCTAGAACTTGCT..........................................................................................................................................................................................................	30	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.................................................TTCAAGATGAAAGTGGGGGTAGAGAG...............................................................................................................................................................................	26	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...............TAATGATCTGAACCTTTGACTCTAGAAC...............................................................................................................................................................................................................	28	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................................TTTCTGCCCTGAGCCTCTGCAGAGATGT...................................	28	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGAT..........................................................................................	27	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................TCTAGAACTTGCTATTCAAGATGAAA.............................................................................................................................................................................................	26	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
....TGCCCTTTGGATAATGATCTGAACCTT...........................................................................................................................................................................................................................	27	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................TGGGAGAAGAGATCTGGACAATTTTTAA...........................................................................	28	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...............................................................GGGGGTAGAGAGCgtgc..........................................................................................................................................................................	17	gtgc	1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
......................................................................GAGAGCACTGACTGCTGGCCGGACC...........................................................................................................................................................	25	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................TCTGAACCTTTGACTCTAGAACTTGCT..........................................................................................................................................................................................................	27	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...............TAATGATCTGAACCTTTGACTCTAGA.................................................................................................................................................................................................................	26	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	1.00	-
.......................................................................................................................TCGATCTGTACCCATGACTGAGGGCAGC.......................................................................................................	28	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGAa..........................................................................................	27	a	1.00	4.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................TTGACTCTAGAACTTGCTATTCAAGATGAA..............................................................................................................................................................................................	30	1	1.00	1.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
....................................................................................................................................ATGACTGAGGGCAGCTGGGAGAAGAG............................................................................................	26	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................ATTAACCCTGGCCTTTCTGCCCTGAGC.................................................	27	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................TCTGAACCTTTGACTCTAGAACTTGC...........................................................................................................................................................................................................	26	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................................GGAGAAGAGATCTGGACAATTTTTAA...........................................................................	26	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..................TGATCTGAACCTTTGACTC.....................................................................................................................................................................................................................	19	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................TGGGAGAAGAGATCTGGACAATTTTTAAa..........................................................................	29	a	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................AGAGCACTGACTGCTGGCCGGACCAGGC.......................................................................................................................................................	28	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...............................TGACTCTAGAACTTGCTATTCAAGA..................................................................................................................................................................................................	25	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................AGAAGAGATCTGGACAATTTTTAATTAAC......................................................................	29	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................GAGATCTGGACgtaa................................................................................	15	gtaa	1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..................TGATCTGAACCTTTGACTCTAGAACTT.............................................................................................................................................................................................................	27	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..................................................TCAAGATGAAAGTGGGGGTAGAGAG...............................................................................................................................................................................	25	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGATCT........................................................................................	29	1	1.00	1.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................AGAAGAGATCTGGACAATTTTTAAT..........................................................................	25	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...........TGGATAATGATCTGAACCTTTGACTCT....................................................................................................................................................................................................................	27	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................CTGTACCCATGACTGAGGGCAGCTG.....................................................................................................	25	1	1.00	1.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
.................................................................................................................GAGGGCTCGATCTGTACCCATGACTGAG.............................................................................................................	28	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................TTCAAGATGAAAGTGGGGGTAGAGA................................................................................................................................................................................	25	1	1.00	1.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-
..............................................................................TGACTGCTGGCCGGACCAGGCTGaaa..................................................................................................................................................	26	aaa	1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-
.............................TTTGACTCTAGAACTTGCTATTCAAGA..................................................................................................................................................................................................	27	1	1.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................................GGAGAAGAGATCTGGACAATTTTTAAT..........................................................................	27	1	1.00	1.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................................................GAGATGTGGTCAGCTGGTCTGCATGGC...............	27	1	1.00	1.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-
....................................................................................................................................................................................................................TGTGGTCAGCTGGTC.......................	15	12	0.08	0.08	-	-	-	-	-	-	-	-	-	-	-	-	-	0.08

AAACTGCCCTTTGGATAATGATCTGAACCTTTGACTCTAGAACTTGCTATTCAAGATGAAAGTGGGGGTAGAGAGCACTGACTGCTGGCCGGACCAGGCTGCGTACTTAGCCAGAGGGCTCGATCTGTACCCATGACTGAGGGCAGCTGGGAGAAGAGATCTGGACAATTTTTAATTAACCCTGGCCTTTCTGCCCTGAGCCTCTGCAGAGATGTGGTCAGCTGGTCTGCATGGCTGCCCGGGCCCAGCA
........................................................(((((((...(((((..........)))))..(((((((.((((((...(((((.((..(((..((...))..))).)).))))).)))))).))........)))))...)))))))............................................................................
..................................................51............................................................................................................................177.......................................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)

SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)

mjTestesWT4()
Testes Data. (testes)

mjTestesWT1()
Testes Data. (testes)

SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)

SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)

SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)

SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)

SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)

SRR014234(GSM319958)
Ovary total. (ovary)

SRR014231(GSM319955)
16.5 dpc total. (testes)

SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)

mjTestesWT2()
Testes Data. (testes)

SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)

.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAG..............................................................................................

7.00

...................................................................................................................................................TGGGAGAAGAGATCTGGACAATTTTT.............................................................................

6.00

2.00

4.00

.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAG............................................................................................

6.00

3.00

2.00

1.00

...............................................TATTCAAGATGAAAGTGGGGGTAGAGA................................................................................................................................................................................

5.00

1.00

4.00

...................................................................................................................................CATGACTGAGGGCAGCTGGGAGAAGAG............................................................................................

5.00

.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGA...........................................................................................

4.00

3.00

1.00

..............................................................................TGACTGCTGGCCGGACCAGGC.......................................................................................................................................................

3.00

2.00

1.00

...................................................................................................................................................TGGGAGAAGAGATCTGGACAATTTT..............................................................................

3.00

1.00

2.00

..................................................TCAAGATGAAAGTGGGGGTAGAGAGC..............................................................................................................................................................................

3.00

1.00

2.00

....................................................................................................................................................................................................TGAGCCTCTGCAGAGATGTGGTCAGC............................

2.00

1.00

...................................................CAAGATGAAAGTGGGGGTAGA..................................................................................................................................................................................

2.00

........................................................TGAAAGTGGGGGTAGAGAGCACTGAC........................................................................................................................................................................

2.00

.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGA.............................................................................................

2.00

............................................................................................................................................................................................................TGCAGAGATGTGGTCAGCTGGTCTG.....................

2.00

1.00

............................................................................ACTGACTGCTGGCCGGACCAGGCTGC....................................................................................................................................................

2.00

1.00

.................................................TTCAAGATGAAAGTGGGGGTAGAGAGC..............................................................................................................................................................................

2.00

1.00

.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGt...........................................................................................

2.00

6.00

1.00

..............................................................................TGACTGCTGGCCGGACCAGGCTGC....................................................................................................................................................

2.00

...............................................................................................................................................................................................................AGAGATGTGGTCAGCTGGTCTGCATG.................

1.00

........................................................................................................................................................GAAGAGATCTGGACAATTTTTAATTAA.......................................................................

1.00

.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGATC.........................................................................................

1.00

..................TGATCTGAACCTTTGACTCTAGAACTTGCT..........................................................................................................................................................................................................

1.00

.................................................TTCAAGATGAAAGTGGGGGTAGAGAG...............................................................................................................................................................................

1.00

...............TAATGATCTGAACCTTTGACTCTAGAAC...............................................................................................................................................................................................................

1.00

...........................................................................................................................................................................................TTTCTGCCCTGAGCCTCTGCAGAGATGT...................................

1.00

.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGAT..........................................................................................

1.00

...................................TCTAGAACTTGCTATTCAAGATGAAA.............................................................................................................................................................................................

1.00

....TGCCCTTTGGATAATGATCTGAACCTT...........................................................................................................................................................................................................................

1.00

...................................................................................................................................................TGGGAGAAGAGATCTGGACAATTTTTAA...........................................................................

1.00

...............................................................GGGGGTAGAGAGCgtgc..........................................................................................................................................................................

gtgc

1.00

0.00

1.00

......................................................................GAGAGCACTGACTGCTGGCCGGACC...........................................................................................................................................................

1.00

.....................TCTGAACCTTTGACTCTAGAACTTGCT..........................................................................................................................................................................................................

1.00

...............TAATGATCTGAACCTTTGACTCTAGA.................................................................................................................................................................................................................

1.00

.......................................................................................................................TCGATCTGTACCCATGACTGAGGGCAGC.......................................................................................................

1.00

.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGAa..........................................................................................

1.00

4.00

1.00

..............................TTGACTCTAGAACTTGCTATTCAAGATGAA..............................................................................................................................................................................................

1.00

....................................................................................................................................ATGACTGAGGGCAGCTGGGAGAAGAG............................................................................................

1.00

..............................................................................................................................................................................ATTAACCCTGGCCTTTCTGCCCTGAGC.................................................

1.00

.....................TCTGAACCTTTGACTCTAGAACTTGC...........................................................................................................................................................................................................

1.00

.....................................................................................................................................................GGAGAAGAGATCTGGACAATTTTTAA...........................................................................

1.00

..................TGATCTGAACCTTTGACTC.....................................................................................................................................................................................................................

1.00

...................................................................................................................................................TGGGAGAAGAGATCTGGACAATTTTTAAa..........................................................................

1.00

.......................................................................AGAGCACTGACTGCTGGCCGGACCAGGC.......................................................................................................................................................

1.00

...............................TGACTCTAGAACTTGCTATTCAAGA..................................................................................................................................................................................................

1.00

.......................................................................................................................................................AGAAGAGATCTGGACAATTTTTAATTAAC......................................................................

1.00

...........................................................................................................................................................GAGATCTGGACgtaa................................................................................

gtaa

1.00

0.00

1.00

..................TGATCTGAACCTTTGACTCTAGAACTT.............................................................................................................................................................................................................

1.00

..................................................TCAAGATGAAAGTGGGGGTAGAGAG...............................................................................................................................................................................

1.00

.....................................................................................................................................TGACTGAGGGCAGCTGGGAGAAGAGATCT........................................................................................

1.00

.......................................................................................................................................................AGAAGAGATCTGGACAATTTTTAAT..........................................................................

1.00

...........TGGATAATGATCTGAACCTTTGACTCT....................................................................................................................................................................................................................

1.00

............................................................................................................................CTGTACCCATGACTGAGGGCAGCTG.....................................................................................................

1.00

.................................................................................................................GAGGGCTCGATCTGTACCCATGACTGAG.............................................................................................................

1.00

.................................................TTCAAGATGAAAGTGGGGGTAGAGA................................................................................................................................................................................

1.00

..............................................................................TGACTGCTGGCCGGACCAGGCTGaaa..................................................................................................................................................

aaa

1.00

0.00

1.00

.............................TTTGACTCTAGAACTTGCTATTCAAGA..................................................................................................................................................................................................

1.00

.....................................................................................................................................................GGAGAAGAGATCTGGACAATTTTTAAT..........................................................................

1.00

................................................................................................................................................................................................................GAGATGTGGTCAGCTGGTCTGCATGGC...............

1.00

....................................................................................................................................................................................................................TGTGGTCAGCTGGTC.......................

0.08