(5)
OTHER.mut
(7)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(30)
TESTES

Sense strand
GTCAGATTCCCTGGGACTGGAGTATCAGACAGTTGTGCGTTGCCGTGTGGGTGCTGGGAATTGAACCTAGGTCTTCTGGTAGATGAGCCATCTCGCCAGCCCTGGAGAAATTAATCTTAATTTGGTTTAGGTAACATGTGATGATATCGAATGATTAAGTTTCACACACAGTTAAAGCCCTGGGCTTTCCTTCTCCGTAGACTTGCGTGCGGGACAGGGCTGTTCTCTCTATCTTGGCTGTCCGGAACGT
...................................................((((..((((..((.(((((....((((((((((...))))).))))).))))).((......))....))..)))).)))).....................................................................................................................
..................................................51..........................................................................................143.........................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT1()
Testes Data. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR051940(GSM545784)
18-32 nt total small RNAs (Mov10l+/-). (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
......................................................TGGGAATTGAACCTAGGTCTTCTGGTA......................................................................................................................................................................... 27 3 18.67 18.67 6.00 7.67 - - 0.33 0.33 - 1.67 - - - - 1.67 - 0.33 - - - - - - - - - - - 0.33 - - 0.33
......................................................TGGGAATTGAACCTAGGTCTTCTGGTAGA....................................................................................................................................................................... 29 2 5.00 5.00 - - 1.00 1.50 0.50 - - - 1.00 - 0.50 - - - 0.50 - - - - - - - - - - - - - - -
.........CCTGGGACTGGAGTATCAGACAGTTGTGCG................................................................................................................................................................................................................... 30 1 5.00 5.00 - - - 5.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................GTGGGTGCTGGGAATTGctta....................................................................................................................................................................................... 21 ctta 4.00 0.00 - - - - - - - - - 4.00 - - - - - - - - - - - - - - - - - - - -
.........................CAGACAGTTGTGCGTTGCCGTGTG......................................................................................................................................................................................................... 24 1 3.00 3.00 - - - - - - 1.00 - - - - - - - - - - - - 1.00 - - - 1.00 - - - - - -
......TTCCCTGGGACTGGAGTATCAGACAGTT........................................................................................................................................................................................................................ 28 1 3.00 3.00 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................TGGGAATTGAACCTAGGTCTTCTGGT.......................................................................................................................................................................... 26 3 2.33 2.33 0.33 0.33 - - - - - 0.67 - - - 0.33 0.33 - - - - - - - - - - - - - - - 0.33 -
.............................................................TGAACCTAGGTCTTCTGGTAGATGAGCC................................................................................................................................................................. 28 1 2.00 2.00 - 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.............................................................TGAACCTAGGTCTTCTGGTAGATGAG................................................................................................................................................................... 26 1 2.00 2.00 - - - - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................TGGGCTTTCCTTCTCCGTAGACTTGCGT.......................................... 28 1 2.00 2.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.....................................................................................................................TAATTTGGTTTAGGTAACATGTGATG........................................................................................................... 26 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
............................................................TTGAACCTAGGTCTTCTGGTAGATGAGC.................................................................................................................................................................. 28 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........TGGGACTGGAGTATCAGACAGTTGTGC.................................................................................................................................................................................................................... 27 1 2.00 2.00 - - 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.............................................................TGAACCTAGGTCTTCTGGTAGATGAGC.................................................................................................................................................................. 27 1 2.00 2.00 - 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TCCTTCTCCGTAGACTTGCGTGCGG...................................... 25 1 2.00 2.00 - - - - 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................TCCGTAGACTTGCGTGCGGGACAGGGC.............................. 27 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................ACAGTTGTGCGTTGCCGTGTGGG....................................................................................................................................................................................................... 23 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
.............GGACTGGAGTATCAGACAGTTGTGC.................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
.......................................................................................................................................................................................................GACTTGCGTGCGGGACAGGGCTGTT.......................... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...................................TGCGTTGCCGTGTGGGTGC.................................................................................................................................................................................................... 19 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................TCTTAATTTGGTTTAGGTAACATGTG.............................................................................................................. 26 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................TGGGTGCTGGGAATTGAAaaaa..................................................................................................................................................................................... 22 aaaa 1.00 0.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
............................................................TTGAACCTAGGTCTTCTGGTAGATG..................................................................................................................................................................... 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................TCCGTAGACTTGCGTGCGGGACAGGGCT............................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................GAGAAATTAATCTTAATTTGGTTTAGG....................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................TCAGACAGTTGTGCGTTGCCGTGTGG........................................................................................................................................................................................................ 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TCCTTCTCCGTAGACTTGCGTGCGGG..................................... 26 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................GTGGGTGCTGGGAATTGAAaaaa..................................................................................................................................................................................... 23 aaaa 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........TGGGACTGGAGTATCAGACAGT......................................................................................................................................................................................................................... 22 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................TATCAGACAGTTGTGCGTTGCCGTGT.......................................................................................................................................................................................................... 26 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
............................ACAGTTGTGCGTTGCCGTGTGGGTGC.................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................CTGGGCTTTCCTTCTCCGTAGACTTGC............................................ 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................TGGGTGCTGGGAATTGAACCTcgaa.................................................................................................................................................................................. 25 cgaa 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
..........................................................................................................................................................................................................TTGCGTGCGGGACAGGGCTGTTCTCTCT.................... 28 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................ACAGTTGTGCGTTGCCGTGTGG........................................................................................................................................................................................................ 22 1 1.00 1.00 - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
..........................................................................................................................................................................................................TTGCGTGCGGGACAGGGCTGTTCTCTC..................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................GTGCTGGGAATTGAACCTAGGTCTTCTGGTA......................................................................................................................................................................... 31 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
............................................................................................................................................................................................................................TGTTCTCTCTATCTTGGCTGTCCGGAtt.. 28 tt 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................TAGACTTGCGTGCGGGACAGGG............................... 22 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...AGATTCCCTGGGACTGGAGTATCAGA............................................................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
...................................TGCGTTGCCGTGTGGGTGCTGGGAAT............................................................................................................................................................................................. 26 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................TCTTCTGGTAGATGAGCCATCT............................................................................................................................................................. 22 1 1.00 1.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
........................TCAGACAGTTGTGCGTTGCCGTGTGa........................................................................................................................................................................................................ 26 a 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................TATCAGACAGTTGTGCGTTGCCGTG........................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
......................................................TGGGAATTGAACCTAGGTCTTCTGtaa......................................................................................................................................................................... 27 taa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
.......................................................................................................GGAGAAATTAATCTTAATTTGGTTTAGGT...................................................................................................................... 29 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................TCTTCTGGTAGATGAGCCATCTCGCCAGC...................................................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - -
....................................................................................................................................................................................................GTAGACTTGCGTGCGGGACAGGGCT............................. 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................................................................................................................................................CTTGCGTGCGGGACAGGGCTGTTC......................... 24 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
............GGGACTGGAGTATCAGACAGTTGTGCGTT................................................................................................................................................................................................................. 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................TGGAGTATCAGACAGTTGTGCGTTGCCGT............................................................................................................................................................................................................ 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.........................CAGACAGTTGTGCGTTGCCGTGTGGGTGC.................................................................................................................................................................................................... 29 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.................TGGAGTATCAGACAGTTGTGCGTTG................................................................................................................................................................................................................ 25 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................TGGGAATTGAACCTAGGTCTTCTGGTAGtt...................................................................................................................................................................... 30 tt 0.50 0.50 - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................GGGAATTGAACCTAGGTCTTCTGGTAGA....................................................................................................................................................................... 28 2 0.50 0.50 - - - - - - - - - - - - - - 0.50 - - - - - - - - - - - - - - -
......................................................TGGGAATTGAACCTAGGTCTTCTGGTAG........................................................................................................................................................................ 28 2 0.50 0.50 - - - - 0.50 - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................TGGGAATTGAACCTAGGTCTTCTGGTAtt....................................................................................................................................................................... 29 tt 0.33 18.67 - - - - - - - - - - - - - - - - - - - - - - - - - - - 0.33 - -
......................................................TGGGAATTGAACCTAGGTCTTCTGGTAa........................................................................................................................................................................ 28 a 0.33 18.67 - - - - - - - - - - - - - - 0.33 - - - - - - - - - - - - - - -
......................................................TGGGAATTGAACCTAGGTCTTCTGG........................................................................................................................................................................... 25 9 0.11 0.11 - - - - - - - - - - - - - - 0.11 - - - - - - - - - - - - - - -
......................................................TGGGAATTGAACCTAGGTCTTC.............................................................................................................................................................................. 22 18 0.06 0.06 0.06 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
GTCAGATTCCCTGGGACTGGAGTATCAGACAGTTGTGCGTTGCCGTGTGGGTGCTGGGAATTGAACCTAGGTCTTCTGGTAGATGAGCCATCTCGCCAGCCCTGGAGAAATTAATCTTAATTTGGTTTAGGTAACATGTGATGATATCGAATGATTAAGTTTCACACACAGTTAAAGCCCTGGGCTTTCCTTCTCCGTAGACTTGCGTGCGGGACAGGGCTGTTCTCTCTATCTTGGCTGTCCGGAACGT
...................................................((((..((((..((.(((((....((((((((((...))))).))))).))))).((......))....))..)))).)))).....................................................................................................................
..................................................51..........................................................................................143.........................................................................................................
Size Perfect hit Total Norm Perfect Norm SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjTestesWT4()
Testes Data. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
mjTestesWT1()
Testes Data. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)
SRR051940(GSM545784)
18-32 nt total small RNAs (Mov10l+/-). (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjTestesWT2()
Testes Data. (testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
..............................................................................GATGAGCCATCTCGCCAGCCCTagt................................................................................................................................................... 25 agt 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................GATGAGCCATCTCGCCAGCCagaa..................................................................................................................................................... 24 agaa 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................GATGAGCCATCTCGCCAGCCagga..................................................................................................................................................... 24 agga 1.00 0.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
.............................................................................GATGAGCCATCTCGCCAGCCCTaaga................................................................................................................................................... 26 aaga 1.00 0.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -