(1)
OTHER.ip
(7)
OTHER.mut
(6)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(31)
TESTES

Sense strand
TTCGTTTCTGTCAGTGGACTATGAAGTTGGCTAAATGGGTACTTAAATTTCTCTCAGACACCCTCCAGCAAATTATAAAGTGATGGTGGATCGGAGTTTACCCTGTGTCATAAAGTCTTGACTGGTGTCTCAGTAGAGAGTGGGTGGTGGAAGCTGAGGTAAGCAAAAATTATTGAGTGCTGCCTTTGGTTTTTATACAGAGTCTACCCCTCAACCCCAAGCCCTTTCTCAATGGGCTGACAGGGAAGCC
....................................................................................................(((...((((........)))).....((((....))))..)))..((((((((..(((..((((.((....))...))))..)))..))))))))......................................................
....................................................................................................101................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
.................................................................................................................................................................................................................................TTCTCAATGGGCTGACAGGGAAGC. 24 1 17.00 17.00 5.00 1.00 - - 2.00 - 2.00 - - - 2.00 - 2.00 - 1.00 - - - - - 1.00 1.00 - - - - - - - - -
................................................................................................................................................................................................................................TTTCTCAATGGGCTGACAGGGAAGCC 26 1 17.00 17.00 2.00 - 1.00 2.00 4.00 2.00 - 1.00 - 1.00 - - - - - 1.00 1.00 - - 1.00 - - - 1.00 - - - - - - -
................................................................................................................................................................................................................................TTTCTCAATGGGCTGACAGGGAAGC. 25 1 16.00 16.00 3.00 4.00 - - - - - - 1.00 - - - 1.00 - 2.00 - - - - 1.00 - 1.00 1.00 - - - - - 1.00 1.00 -
...........................................................................TAAAGTGATGGTGGATCGGAGTTTA...................................................................................................................................................... 25 1 6.00 6.00 - - 2.00 1.00 - 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TCTCAATGGGCTGACAGGGAAGCC 24 1 5.00 5.00 1.00 2.00 - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................TTATAAAGTGATGGTGGATCGGAGT......................................................................................................................................................... 25 1 5.00 5.00 - - 1.00 1.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - -
..................................................................................................................................................................................................................................TCTCAATGGGCTGACAGGGAAGC. 23 1 4.00 4.00 1.00 2.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.................................................................................................................................................................................................................................TTCTCAATGGGCTGACAGGGAAGCC 25 1 4.00 4.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - 1.00 - - - - 1.00 - - - - -
..............................................................................................................TAAAGTCTTGACTGGTGTCTCAGTAG.................................................................................................................. 26 1 3.00 3.00 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................CTTTCTCAATGGGCTGACAGG...... 21 1 2.00 2.00 - - - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - -
......................................................................................................................TGACTGGTGTCTCAGTAGAGAGTGGGTG........................................................................................................ 28 1 2.00 2.00 - 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................TATAAAGTGATGGTGGATCGGAGTTTA...................................................................................................................................................... 27 1 2.00 2.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................TCAACCCCAAGCCCTTTCTCAATGGGCTG........... 29 1 2.00 2.00 - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................................................................TATAAAGTGATGGTGGATCGGAGTT........................................................................................................................................................ 25 1 2.00 2.00 - - 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................TTCTCAATGGGCTGACAGGGAAGCCatt 28 att 2.00 4.00 - - - 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................................................................................................................CAATGGGCTGACAGGGAAGCC 21 1 2.00 2.00 - - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................CTTTCTCAATGGGCTGACAGGGAAGC. 26 1 2.00 2.00 - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................TTCTCAATGGGCTGACAGGGAAGCCcgtg 29 cgtg 1.00 4.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TCAATGGGCTGACAGGGA.... 18 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TCTCAATGGGCTGACAGGGAAGCaaaa 27 aaaa 1.00 4.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TCAATGGGCTGACAGGGAAGC. 21 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TCTCAATGGGCTGACAGGGAAGCCaa 26 aa 1.00 5.00 - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - -
.................................................................................................................................................................................................................................TTCTCAATGGGCTGACAGGGAAccca 26 ccca 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TCAATGGGCTGACAGGGAAGCCagtt 26 agtt 1.00 0.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
........................................................................TTATAAAGTGATGGTGGATCGGAGTT........................................................................................................................................................ 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TCTCAATGGGCTGACAGGGAAGCagg 26 agg 1.00 4.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................CTTTCTCAATGGGCTGACAGGGAA... 24 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
.........................................................................TATAAAGTGATGGTGGATCGGAGTTT....................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TCTCAATGGGCTGACAGGGA.... 20 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................TTCTCAATGGGCTGACAGG...... 19 1 1.00 1.00 - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TCAATGGGCTGACAGGGAAGCCggtg 26 ggtg 1.00 0.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................................ATGGGCTGACAGGGAAGCC 19 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
....................................................................................................................................................................................................................................TCAATGGGCTGACAGGGAAGCCagag 26 agag 1.00 0.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................TTTCTCAATGGGCTGACAGGGAAG.. 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
...................................................................................................................................................................................................................................CTCAATGGGCTGACAGGGAAG.. 21 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................TTTCTCAATGGGCTGACAGGGAAGCa 26 a 1.00 16.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...................................................................................................................................................................................................................................CTCAATGGGCTGACAGGGAAGCCggtg 27 ggtg 1.00 0.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................CTTTCTCAATGGGCTGACAGGGAAG.. 25 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................TTTCTCAATGGGCTGACAGGGAAGCCaga 29 aga 1.00 17.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TGACTGGTGTCTCAGTAGAGAGTGGG.......................................................................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................TGACTGGTGTCTCAGTAGAGAGTGGGT......................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................TTTCTCAATGGGCTGACAGGGAAGCga 27 ga 1.00 16.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.......................................................................................................................................................................................................................CCCAAGCCCTTTCTCAATGGGCTGA.......... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................................................................................................TGTGTCATAAAGTCTTGACTGGTGTCc........................................................................................................................ 27 c 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
..............TGGACTATGAAGTTGGCTAAATGGGTA................................................................................................................................................................................................................. 27 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TCAATGGGCTGACAGGGAAGCCaatg 26 aatg 1.00 0.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TAAAGTGATGGTGGATCGGAGTT........................................................................................................................................................ 23 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................................................................GCTGACAGGGAAGCCggag 19 ggag 1.00 0.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................TTTCTCAATGGGCTGACAGGGAAGCCt 27 t 1.00 17.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
....................................................................................................................................................................................................................................TCAATGGGCTGACAGGGAA... 19 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................................................................................................................................TCTCAATGGGCTGACAGGGAAGCCt 25 t 1.00 5.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................CTTTCTCAATGGGCTGACAGGG..... 22 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
.................................................................................................................................................................................................................................TTCTCAATGGGCTGACAGGGAAGCCat 27 at 1.00 4.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
................................................................................................................................................................................................................................TTTCTCAATGGGCTGACAGGGcagc. 25 cagc 1.00 0.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................................................................................................CTTTCTCAATGGGCTGACA........ 19 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................................................................................................................................................AATGGGCTGACAGGGAAGCC 20 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................TAAAGTGATGGTGGATCGGAGTTT....................................................................................................................................................... 24 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..........................................................................................................................TGGTGTCTCAGTAGAGAGTGGGTGG....................................................................................................... 25 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................TAAAGTCTTGACTGGTGTCTCAGTA................................................................................................................... 25 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................TAAAGTCTTGACTGGTGTCTCAGTAGAG................................................................................................................ 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
TTCGTTTCTGTCAGTGGACTATGAAGTTGGCTAAATGGGTACTTAAATTTCTCTCAGACACCCTCCAGCAAATTATAAAGTGATGGTGGATCGGAGTTTACCCTGTGTCATAAAGTCTTGACTGGTGTCTCAGTAGAGAGTGGGTGGTGGAAGCTGAGGTAAGCAAAAATTATTGAGTGCTGCCTTTGGTTTTTATACAGAGTCTACCCCTCAACCCCAAGCCCTTTCTCAATGGGCTGACAGGGAAGCC
....................................................................................................(((...((((........)))).....((((....))))..)))..((((((((..(((..((((.((....))...))))..)))..))))))))......................................................
....................................................................................................101................................................................................................200................................................
Size Perfect hit Total Norm Perfect Norm SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR014236(GSM319960)
10 dpp total. (testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
mjTestesWT2()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
GSM475280(GSM475280)
Mili-IP. (mili testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
......................................................CACCCTCCAGCAAActaa.................................................................................................................................................................................. 18 ctaa 1.00 0.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00