| Gene: Stk11 | ID: uc007gbu.1_intron_0_0_chr10_79579653_f.5p | SPECIES: mm9 |
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(2) OTHER.mut |
(1) OVARY |
(1) PIWI.ip |
(10) TESTES |
| AAGAAGAAAAAGCTGCGCAGGATCCCCAATGGAGAGGCCAACGTCAAGAAGTAGGTGCCAAGGGCCTGGGGCCGACGCGGGCGCTGCCTTGAGCTCCTTGGGCAGCCCTTCCTCCTACTTTCTGGCTCTTCTCTTTCCTCTAACCGTTTTCTCTTCTCATTTCCTTCCTCCTTTTTCATCTCTTTCCTTTTACTGCCTTATCTACCCCATCTATCCCTGAGCGTCACCTCGTGGGGTCTGTATGTTAGGG ....................................................................................................(((((........((........))........((......)).................................................)))))..................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014234(GSM319958) Ovary total. (ovary) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................GTAGGTGCCAAGGGCCTGGGGCCGACGCGGGCGCTGCCTTGAGCTCCTTGGG.................................................................................................................................................... | 52 | 1 | 138.00 | 138.00 | 138.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................TGAGCGTCACCTCGTGGGGTCTGTATG...... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - |
| ....................GATCCCCAATGGAGAGGCCAACGTCAAG.......................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................GCGTCACCTCGTGGGGTCTGTATGTT.... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 |
| AAGAAGAAAAAGCTGCGCAGGATCCCCAATGGAGAGGCCAACGTCAAGAAGTAGGTGCCAAGGGCCTGGGGCCGACGCGGGCGCTGCCTTGAGCTCCTTGGGCAGCCCTTCCTCCTACTTTCTGGCTCTTCTCTTTCCTCTAACCGTTTTCTCTTCTCATTTCCTTCCTCCTTTTTCATCTCTTTCCTTTTACTGCCTTATCTACCCCATCTATCCCTGAGCGTCACCTCGTGGGGTCTGTATGTTAGGG ....................................................................................................(((((........((........))........((......)).................................................)))))..................................................... ....................................................................................................101................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363964(GSM822766) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesWT3() Testes Data. (testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014234(GSM319958) Ovary total. (ovary) | mjTestesWT2() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................TTTCCTCTAACCGTTTTCTCTTCTCA........................................................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................CCTCCTACTTTCTGGCTCTTCTCTTTCCTC.............................................................................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .......................CCCAATGGAGAGGCCAACGTCAAGAAa........................................................................................................................................................................................................ | 27 | a | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................GCCTTATCTACCCCATCTATCCCTGA.............................. | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................TTTCCTCTAACCGTTTTCTCTTCTC............................................................................................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..........................................................................................................................................................................................................TACCCCATCTATCCCTGAGCGTCA........................ | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................CTTCTCTTTCCTCTAACCGTTTTCTC................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................TCCTCTAACCGTTTTCTCTTCTCA........................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................TCCTTCCTCCTTTTTCA........................................................................ | 17 | 11 | 0.09 | 0.09 | - | 0.09 | - | - | - | - | - | - | - | - | - |