| Gene: X99384 | ID: uc007ffx.1_intron_11_0_chr10_60809886_r | SPECIES: mm9 |
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(9) OTHER.mut |
(1) PIWI.ip |
(16) TESTES |
| CTGGGAACCCTCGTCATGTTCCACCACAGTAGGACCACCTCCCAGCTAGAGTGAGTGGTCGGGAGGTCCCGCCAGCAGAAGGGTTGGAAGGACAGGAAGTAGAGAGGGTGAAGCTGCCTCTGGGGTGATGGGATCATATCCAGAGGACAGAGCATCTTTGCATCATTTGCCACAGATTGGTTTGGTGTGCTGGAGAGAGGCCACTGGACCCTTCTGGGTCTGGTCTCCATTTCCCCAGTAGAATTCAGAAGTGATTTGATGCCTCCCAGTGGCTGATGGGTGGCAACGGGCTGTGTTGCGGTCTCTGATTACACTCCCGATTCTCACTTTATCAGGGCAGCCTCCCCGTTGGCCAAACCCCTGCCCATGGAGCAGTTTCAGGTGA .......................................................................................................................................................................................................................................................(((((((.....((((.((((........)))).)))).((((..((((..(((...)))...)))).))))....)))))))....................................................... ...........................................................................................................................................................................................................................................236................................................................................................335................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGT......................................................................................... | 23 | 1 | 13.00 | 13.00 | 2.00 | 1.00 | 1.00 | 1.00 | 3.00 | 1.00 | 3.00 | - | - | - | - | - | - | - | 1.00 | - |
| .................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGa......................................................................................... | 23 | a | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................TGGCTGATGGGTGGCAACGGGCTGT........................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................ACCACAGTAGGACCACCTCCCAGCTA................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................CTGATGGGTGGCAACGGGCTGTGT......................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................ACAGTAGGACCACCTCCCAGCTAGAGg............................................................................................................................................................................................................................................................................................................................................. | 27 | g | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................CAGTAGGACCACCTCCCAGCTAGAGgca........................................................................................................................................................................................................................................................................................................................................... | 28 | gca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGTTt....................................................................................... | 25 | t | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................CTGATGGGTGGCAACGGGCTGTGg......................................................................................... | 24 | g | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTaa......................................................................................... | 23 | aa | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTaga........................................................................................ | 24 | aga | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGTata...................................................................................... | 26 | ata | 1.00 | 13.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGTGGTCGGGAGGTCCCGCCAtt..................................................................................................................................................................................................................................................................................................................... | 26 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................GATGGGTGGCAACGGGCTGTGa......................................................................................... | 22 | a | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGTT........................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................GAAGGACAGGAAGTAGAG......................................................................................................................................................................................................................................................................................... | 18 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 |
| CTGGGAACCCTCGTCATGTTCCACCACAGTAGGACCACCTCCCAGCTAGAGTGAGTGGTCGGGAGGTCCCGCCAGCAGAAGGGTTGGAAGGACAGGAAGTAGAGAGGGTGAAGCTGCCTCTGGGGTGATGGGATCATATCCAGAGGACAGAGCATCTTTGCATCATTTGCCACAGATTGGTTTGGTGTGCTGGAGAGAGGCCACTGGACCCTTCTGGGTCTGGTCTCCATTTCCCCAGTAGAATTCAGAAGTGATTTGATGCCTCCCAGTGGCTGATGGGTGGCAACGGGCTGTGTTGCGGTCTCTGATTACACTCCCGATTCTCACTTTATCAGGGCAGCCTCCCCGTTGGCCAAACCCCTGCCCATGGAGCAGTTTCAGGTGA .......................................................................................................................................................................................................................................................(((((((.....((((.((((........)))).)))).((((..((((..(((...)))...)))).))))....)))))))....................................................... ...........................................................................................................................................................................................................................................236................................................................................................335................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | mjTestesWT3() Testes Data. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | mjTestesKO5() Testes Data. (Zcchc11 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029041(GSM433293) 6w_homo_tdrd6-KO. (tdrd6 testes) | SRR029039(GSM433291) 25dpp_homo_tdrd6-KO. (tdrd6 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR029040(GSM433292) 6w_hetero_tdrd6-KO. (tdrd6 testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................................................................................................................................................................................TTCTCACTTTATCAGcttt.................................................. | 19 | cttt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ................................................................................................................................................................................................................................ATTTCCCCAGTAGAAaaac.............................................................................................................................................. | 19 | aaac | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................GGCCACTGGACCCgga.............................................................................................................................................................................. | 16 | gga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................TTCTCACTTTATCAGcct.................................................. | 18 | cct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |