| Gene: Ncstn | ID: uc007dpk.1_intron_3_0_chr1_173998405_r | SPECIES: mm9 |
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(7) OTHER.mut |
(1) OVARY |
(2) PIWI.ip |
(2) PIWI.mut |
(23) TESTES |
| TTGCAGGAGGAACCAACTTCAGCAGCTCCATCCAGGCTGATCCCCAGACAGTAAGAAAAGATGGGCCCCGTTCCTTTCTGTCTCTGTTAACCCAGGCTGCCCCCATCCTCTATGGTCCGTGCCAACTTCCCAAACTTTGGGATTTAGCATGCCCCCTCATGCCTGCGAGGATGATACCTCTGAGAGTTCTTGAGTGGGCTTTATCTACATCCTTTCGACCGGCCACCATCTCCCAGCCCCAGGAGTAGAGTTCCTGTCTTGTAACTGGGCTCTGCTCATTGTTTGCTTGGTCTTGTGACAAGTTGGAGCATTTTCTTTTTTCTATGTCCCGATCCTAGGTTACACGTCTGCTCTATGGGTTCCTGGTTAGAGCTAACAACTCATGGTT .................................................................................................................................................................................................................................................(((((((((((((...(((((.((.(((((..((.........))..))))).)).)))))..)))))...........))))).)))........................................................... ..............................................................................................................................................................................................................................................239................................................................................................338................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR037898(GSM510434) ovary_rep3. (ovary) | SRR037903(GSM510439) testes_rep4. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................CTGCGAGGATGATACCTCTGAGA........................................................................................................................................................................................................... | 23 | 1 | 10.00 | 10.00 | 1.00 | - | 3.00 | 2.00 | - | - | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | 1.00 | - | - | - | - |
| ..................................................................................................................................................................CTGCGAGGATGATACCTCTGAGAG.......................................................................................................................................................................................................... | 24 | 1 | 6.00 | 6.00 | - | 1.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ..................................................................................................................................................................CTGCGAGGATGATACCTCTGAGAGTTCTTG.................................................................................................................................................................................................... | 30 | 1 | 5.00 | 5.00 | - | - | - | 2.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................CTGCGAGGATGATACCTCTGAGAGTTCTTGAGTGGG.............................................................................................................................................................................................. | 36 | 1 | 4.00 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................CTGCGAGGATGATACCTCTGAGAGT......................................................................................................................................................................................................... | 25 | 1 | 3.00 | 3.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ..................................................................................................................................................................CTGCGAGGATGATACCTCTGAG............................................................................................................................................................................................................ | 22 | 1 | 3.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................TGCGAGGATGATACCTCTGAGA........................................................................................................................................................................................................... | 22 | 1 | 3.00 | 3.00 | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...................................................................................................................................................................TGCGAGGATGATACCTCTGAGAG.......................................................................................................................................................................................................... | 23 | 1 | 3.00 | 3.00 | - | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................TCCTGGTTAGAGCTAACAACTCATG... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................ATGCCTGCGAGGATGATACCTCTGAGA........................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................CTGCGAGGATGATACCTCTGAGAGaa........................................................................................................................................................................................................ | 26 | aa | 2.00 | 6.00 | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................TTTCTATGTCCCGATCCTAGa................................................. | 21 | a | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................CTGCGAGGATGATACCTCTGAGAGTT........................................................................................................................................................................................................ | 26 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - |
| ..................................................................................................................................................................CTGCGAGGATGATACCTCTGAGAGa......................................................................................................................................................................................................... | 25 | a | 2.00 | 6.00 | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................TGCGAGGATGATACCTCTGAGAGTTCTTGAGT................................................................................................................................................................................................. | 32 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................GGTTAGAGCTAACcggc....... | 17 | cggc | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................GTTCTTGAGTGGGCTagtc........................................................................................................................................................................................ | 19 | agtc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................TCTGAGAGTTCTTGAGTGGG.............................................................................................................................................................................................. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................ATACCTCTGAGAGTTCTTGAGTGGG.............................................................................................................................................................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................TGCGAGGATGATACCTCTGAGAGT......................................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................ATACCTCTGAGAGTTCTTGAGTGGa.............................................................................................................................................................................................. | 25 | a | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................CTGCGAGGATGATACCTCTGAGAGTcttg..................................................................................................................................................................................................... | 29 | cttg | 1.00 | 3.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................................................................................................................TCTTGTGACAAGTTGGAGCA.............................................................................. | 20 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................AGGATGATACCTCTGAGAGTTCTTGAGTGG............................................................................................................................................................................................... | 30 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................GTTCTTGAGTGGGCTTaggg....................................................................................................................................................................................... | 20 | aggg | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................ACCTCTGAGAGTTCTTGAGTGGGa............................................................................................................................................................................................. | 24 | a | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................................................................TGGGTTCCTGGTTAGAGCTAACAACg....... | 26 | g | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................................................................................................................CTGCGAGGATGATACCTCTGAGAGca........................................................................................................................................................................................................ | 26 | ca | 1.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................TGCGAGGATGATACCTCTGAGAGTTaa...................................................................................................................................................................................................... | 27 | aa | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................ATGATACCTCTGAGA........................................................................................................................................................................................................... | 15 | 8 | 0.12 | 0.12 | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TTGCAGGAGGAACCAACTTCAGCAGCTCCATCCAGGCTGATCCCCAGACAGTAAGAAAAGATGGGCCCCGTTCCTTTCTGTCTCTGTTAACCCAGGCTGCCCCCATCCTCTATGGTCCGTGCCAACTTCCCAAACTTTGGGATTTAGCATGCCCCCTCATGCCTGCGAGGATGATACCTCTGAGAGTTCTTGAGTGGGCTTTATCTACATCCTTTCGACCGGCCACCATCTCCCAGCCCCAGGAGTAGAGTTCCTGTCTTGTAACTGGGCTCTGCTCATTGTTTGCTTGGTCTTGTGACAAGTTGGAGCATTTTCTTTTTTCTATGTCCCGATCCTAGGTTACACGTCTGCTCTATGGGTTCCTGGTTAGAGCTAACAACTCATGGTT .................................................................................................................................................................................................................................................(((((((((((((...(((((.((.(((((..((.........))..))))).)).)))))..)))))...........))))).)))........................................................... ..............................................................................................................................................................................................................................................239................................................................................................338................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR014231(GSM319955) 16.5 dpc total. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR014232(GSM319956) 16.5 dpc MILI. (mili testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR029037(GSM433289) 18dpp_homo_tdrd6-KO. (tdrd6 testes) | mjTestesWT3() Testes Data. (testes) | SRR014229(GSM319953) 10 dpp MILI. (mili testes) | mjTestesWT2() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | GSM509278(GSM509278) small RNA cloning by length. (piwi testes) | SRR029038(GSM433290) 25dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR037898(GSM510434) ovary_rep3. (ovary) | SRR037903(GSM510439) testes_rep4. (testes) | SRR029036(GSM433288) 18dpp_hetero_tdrd6-KO. (tdrd6 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................ATGCCTGCGAGGATtgtt........................................................................................................................................................................................................................ | 18 | tgtt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................TGATCCCCAGACAGTttcc................................................................................................................................................................................................................................................................................................................................................ | 19 | ttcc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |