(4)
OTHER.mut
(1)
OVARY
(4)
PIWI.ip
(2)
PIWI.mut
(1)
TDRD1.ip
(28)
TESTES

Sense strand
CTTTGGCCAAGTGAAGCAGCCTGCCAGAAGAGAGGAAGGTAGTCACAATGGTGAGAGAGGGGAATCTTTCTTTCCTCTTCCCTGCCAGAGCATGCATTTCCATGTTTAAAGGGAAAAAAAAGATGAATACTGGTGGGTCTTAATAGTCTGAAAGGTTAGACTGATGTTAGCCTGGTGAGGCATCTAATACTTGCCTAGTTGTTTCATGTGATCAGCTGAAGGTAGCTGGCTACCTCGGAGTATTTAGCAG


Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
.....................TGCCAGAAGAGAGGAAGGTAGTCACA........................................................................................................................................................................................................... 26 1 6.00 6.00 - - 3.00 - - - 1.00 - - 1.00 - - - - - - 1.00 - - - - - - - - - - - -
...........................................................................................................................................................................................TACTTGCCTAGTTGTTTCATGTGATC..................................... 26 1 5.00 5.00 - 3.00 - - 2.00 - - - - - - - - - - - - - - - - - - - - - - - -
...............................................................................................................................................TAGTCTGAAAGGTTAGACTGATGTTAGC............................................................................... 28 1 4.00 4.00 - - - - - 1.00 - 1.00 - - - - - - - - - - - - 1.00 - - - - 1.00 - - -
........................................................................................................................................................................................TAATACTTGCCTAGTTGTTTCATGTGATC..................................... 29 1 3.00 3.00 - 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................TGAATACTGGTGGGTCTTAATAGTC...................................................................................................... 25 1 2.00 2.00 - - - - - 2.00 - - - - - - - - - - - - - - - - - - - - - - -
............................................................................................................................................TAATAGTCTGAAAGGTTAGACTGATGTTAGC............................................................................... 31 1 2.00 2.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - -
........................CAGAAGAGAGGAAGGTAGTCACAAT......................................................................................................................................................................................................... 25 1 2.00 2.00 - - - - - - - - - - 2.00 - - - - - - - - - - - - - - - - - -
................................AGGAAGGTAGTCACAATGGTGAGAGAGG.............................................................................................................................................................................................. 28 1 2.00 2.00 2.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................AGAAGAGAGGAAGGTAGTCACAATG........................................................................................................................................................................................................ 25 1 2.00 2.00 - - - - - - - - - - - 1.00 - - - - - - 1.00 - - - - - - - - - -
......................................................................................................................................................................................TCTAATACTTGCCTAGTTGTTTCATG.......................................... 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
.............AAGCAGCCTGCCAGAAGAGAGGAAG.................................................................................................................................................................................................................... 25 1 1.00 1.00 - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - -
................................AGGAAGGTAGTCACAATGGTGAGAGAG............................................................................................................................................................................................... 27 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................AGAAGAGAGGAAGGTAGTCACAATGG....................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - -
......................................................................TTTCCTCTTCCCTGCCAGAGCATGCAT......................................................................................................................................................... 27 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
................................AGGAAGGTAGTCACAATGGTGAGAG................................................................................................................................................................................................. 25 1 1.00 1.00 - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - -
.........................AGAAGAGAGGAAGGTAGTCACAATGt....................................................................................................................................................................................................... 26 t 1.00 2.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................TGAATACTGGTGGGTCTTAAT.......................................................................................................... 21 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
.........................AGAAGAGAGGAAGGTAGTCACAATGGT...................................................................................................................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - -
.......................CCAGAAGAGAGGAAGGTAGTCACAATGt....................................................................................................................................................................................................... 28 t 1.00 0.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TGTTTAAAGGGAAAAAAAAGATGAATACT....................................................................................................................... 29 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................TAATACTTGCCTAGTTGTTTCATGTG........................................ 26 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
........................................................................................................................................................................................TAATACTTGCCTAGTTGTTTCATGTGA....................................... 27 1 1.00 1.00 - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................AGACTGATGTTAGCCTGGTGAGGCATC.................................................................. 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - -
..................................................................................................TCCATGTTTAAAGGGAAAAAAAAGAag............................................................................................................................. 27 ag 1.00 0.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
.......................CCAGAAGAGAGGAAGGTAGTCACAATGcga..................................................................................................................................................................................................... 30 cga 1.00 0.00 - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - -
.........................................................................................................TTAAAGGGAAAAAAAAGATGAATACTGGTG................................................................................................................... 30 1 1.00 1.00 - - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - -
..........................GAAGAGAGGAAGGTAGTCACAATGGTG..................................................................................................................................................................................................... 27 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
...........TGAAGCAGCCTGCCAGAAGAGAGGAA..................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
......................GCCAGAAGAGAGGAAGGTAGTCACAAT......................................................................................................................................................................................................... 27 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.........................AGAAGAGAGGAAGGTAGTCACAATGc....................................................................................................................................................................................................... 26 c 1.00 2.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TGTTTAAAGGGAAAAAAAAGATGAATACTGGT.................................................................................................................... 32 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
........................CAGAAGAGAGGAAGGTAGTCACAATG........................................................................................................................................................................................................ 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
......CCAAGTGAAGCAGCCTGCCAGAAGAG.......................................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00 -
...........................................................................................................................TGAATACTGGTGGGTCTTAATAGTCTG.................................................................................................... 27 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - -
.....................TGCCAGAAGAGAGGAAGGTAGTCA............................................................................................................................................................................................................. 24 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - 1.00 - - - -
...........................................................................................................................................................TTAGACTGATGTTAGCCTGGTGAGGCATCT................................................................. 30 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - 1.00 - - - - - - -
............................AGAGAGGAAGGTAGTCACAATGGTGA.................................................................................................................................................................................................... 26 1 1.00 1.00 - - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - -
............................................................................................................................................................................................ACTTGCCTAGTTGTTTCATGTGATC..................................... 25 1 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1.00
.........................................................................................................TTAAAGGGAAAAAAAAGATGAATACTGGT.................................................................................................................... 29 1 1.00 1.00 - - - - - - - - - - - - 1.00 - - - - - - - - - - - - - - - -
....................CTGCCAGAAGAGAGGAAGGTAGTCAC............................................................................................................................................................................................................ 26 1 1.00 1.00 - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - -
.............................................................................................................................................................................................................ATGTGATCAGCTGAAGGTAGCTGGCT................... 26 1 1.00 1.00 - - - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................TTAGACTGATGTTAGCCTGGTGAGGCATC.................................................................. 29 1 1.00 1.00 - - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - -
.........................AGAAGAGAGGAAGGTAGTCACAATGGTttt................................................................................................................................................................................................... 30 ttt 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
.....................................................................................................................................TGGGTCTTAATAGTCTGAAAGGTTA............................................................................................ 25 1 1.00 1.00 - - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - -
..............................................................................................................................................................................................................................TAGCTGGCTACCTCGGAGTATT...... 22 1 1.00 1.00 - - - - - - 1.00 - - - - - - - - - - - - - - - - - - - - - -
...........................................................................................................................................................................................TACTTGCCTAGTTGTTTCATGTGAT...................................... 25 1 1.00 1.00 - 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - -
......................................................................................................TGTTTAAAGGGAAAAAAAAGATGAATACTGG..................................................................................................................... 31 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -
..................................................................................................................AAAAAAAGATGAATACTGGTGGGTCT.............................................................................................................. 26 1 1.00 1.00 - - - - - - - - - - - - - - - - - 1.00 - - - - - - - - - - -
............................AGAGAGGAAGGTAGTCACAATGGTGAGA.................................................................................................................................................................................................. 28 1 1.00 1.00 1.00 - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Antisense strand
CTTTGGCCAAGTGAAGCAGCCTGCCAGAAGAGAGGAAGGTAGTCACAATGGTGAGAGAGGGGAATCTTTCTTTCCTCTTCCCTGCCAGAGCATGCATTTCCATGTTTAAAGGGAAAAAAAAGATGAATACTGGTGGGTCTTAATAGTCTGAAAGGTTAGACTGATGTTAGCCTGGTGAGGCATCTAATACTTGCCTAGTTGTTTCATGTGATCAGCTGAAGGTAGCTGGCTACCTCGGAGTATTTAGCAG


Size Perfect hit Total Norm Perfect Norm SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR014234(GSM319958)
Ovary total. (ovary)
SRR363960(GSM822762)
Adult Library#1Small RNA Miwi IPDuplexed run:. (testes)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)
mjTestesWT3()
Testes Data. (testes)
SRR014229(GSM319953)
10 dpp MILI. (mili testes)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)