| Gene: Smg7 | ID: uc007czn.1_intron_15_0_chr1_154706145_r | SPECIES: mm9 |
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(2) OTHER.mut |
(2) PIWI.ip |
(1) TDRD1.ip |
(12) TESTES |
| CCAGCTGCCTCCACTAATCTACAAAAAGCACTTTCTAAAGCACTGGAAAGGTAGGACTGACTTTTCCAAGAGAATTTGTGTAACGTGGAGTCTTAATCGCTCAAATTTTGTTGTTTAGGAAATTGTAGCAATGATCTCTAGTCATCTTTAGGTCTAAAACTACAGAGAACATAATTATTTTGTGCACAGTCACGTAATTTTACCCAGTATGTGGTTTCTTGTAGCTGAGTGCTGACTCATCTGAGTTGTAGCTGTGAAGCTAGACCTGGACAGAAAGAACCCTTTTCTTGTCTATTGGATGATGAAGTAACTTGCAAGCTAAACCCAGTTTAAGGGTTTTGCAAATTTTGCTGATTAAGATTGATTCAAGTTTTTCTTTCATTTCAGCCGGGATGAGTTGAAAACCAAGTGGGGTGTTTCTGACTTCATCAAGGCCT .......................................................((((.(((...(((.((((((((.((....(((....)))...)).)))))))).)))...)))...((((((....(((((..((....))..))))).....))))))....(((((.....)))))..))))....................................................................................................................................................................................................................................................... ..................................................51.........................................................................................................................................190..................................................................................................................................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037903(GSM510439) testes_rep4. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
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| ................................................................................................................GTTTAGGAAATTGTAGCAATGATCTCTAGTCATCTTTAGGTCTAAAACTACA................................................................................................................................................................................................................................................................................. | 52 | 1 | 45.00 | 45.00 | 45.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTAGGACTGACTTTTCCAAGAGAATTT........................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................TCTGAGTTGTAGCTGTGA.................................................................................................................................................................................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..........................AGCACTTTCTAAAGCACTGGAAAGccgg............................................................................................................................................................................................................................................................................................................................................................................................... | 28 | ccgg | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................GGGATGAGTTGAAAAaaa.............................. | 18 | aaa | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ....................ACAAAAAGCACTTTCTAAAGCACTGGAA..................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..............................................................................................................TTGTTTAGGAAATTGTAGCAATGATCTC........................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................CGGGATGAGTTGAAAACCAAGTGG......................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ..................................CTAAAGCACTGGAAAG................................................................................................................................................................................................................................................................................................................................................................................................... | 16 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | 0.17 |
| CCAGCTGCCTCCACTAATCTACAAAAAGCACTTTCTAAAGCACTGGAAAGGTAGGACTGACTTTTCCAAGAGAATTTGTGTAACGTGGAGTCTTAATCGCTCAAATTTTGTTGTTTAGGAAATTGTAGCAATGATCTCTAGTCATCTTTAGGTCTAAAACTACAGAGAACATAATTATTTTGTGCACAGTCACGTAATTTTACCCAGTATGTGGTTTCTTGTAGCTGAGTGCTGACTCATCTGAGTTGTAGCTGTGAAGCTAGACCTGGACAGAAAGAACCCTTTTCTTGTCTATTGGATGATGAAGTAACTTGCAAGCTAAACCCAGTTTAAGGGTTTTGCAAATTTTGCTGATTAAGATTGATTCAAGTTTTTCTTTCATTTCAGCCGGGATGAGTTGAAAACCAAGTGGGGTGTTTCTGACTTCATCAAGGCCT .......................................................((((.(((...(((.((((((((.((....(((....)))...)).)))))))).)))...)))...((((((....(((((..((....))..))))).....))))))....(((((.....)))))..))))....................................................................................................................................................................................................................................................... ..................................................51.........................................................................................................................................190..................................................................................................................................................................................................................................................... |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR028730(GSM400967) Tdrd1-associated. (tdrd1 testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | GSM475280(GSM475280) Mili-IP. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR037903(GSM510439) testes_rep4. (testes) | GSM509276(GSM509276) small RNA cloning by length. (testes) | SRR037902(GSM510438) testes_rep3. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) |
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| ................ACAAAAAGCACTTTgtgt................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | gtgt | 3.00 | 0.00 | - | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................TCTATTGGATGATGAAGgt.................................................................................................................................. | 19 | gt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ...............................................................................................................................................................................................................................................................................................TCTATTGGATGATGAggc.................................................................................................................................... | 18 | ggc | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - |