| Gene: sox-13 | ID: uc007cqj.1_intron_0_0_chr1_135280502_r | SPECIES: mm9 |
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(4) OTHER.mut |
(3) PIWI.ip |
(2) PIWI.mut |
(19) TESTES |
| CATCCCGTGAGCAGGCCCTCCCTGGTGGCCAGAGGCGGCTTGTGGCTGCTGTGAGAGACTGGGGTTGTGTGTGTGTCTGGTCTTTGTGTGAGGCAGGCAGAGCAGCCAGCAAGGATCTGGGAGCAGAGTTGTGTGCCATCTGCCTGTGTGTGACCCCTGATGGATAATGACTGTGTGCGAGACTGGTGACTGGGAGTTGGGTATAAGACCTAAACTGGGGCACCTGCAGCCTGACAAACGCAGGGCAAATTGAGAACACCACAGGTATTCATCCCGTAGGAAGGCCCCTTATTTGACCATGACAGGCACTAGGGTAGAGTTCTGTGGTCAATGACACTAAAACAAAATAATATTCACGTGCCACCGTCCAACATACCCTCGACTCTGAGCTTTCGAGCTATAGCTGGCAGTGAATTTGGCCATCAGGAAGCACACGCAAGGGCCAGAGTATGCCGGTTACCCAGCCTGCAGGGAGGGCTGGAAGGGCTGGGAGGGCACATGGGTACATCTGTAATTGCGAATTTTCTCTGCCTCTCAGCCCGCAGGCTGGCCAGGCACAGGTGAGCTCAGATATCCTGTTCCCTCGGG ....................................................................................................................................................................................................................................(((.......((.((((....(((.((..((((((((.((((..(((.(((....(((..((((......))))..))).))))))..))))))))))))...((.(((....................))).))...)))))....))))))...(((((((....)))).)))..))).................................................................................................................................................................................... ..................................................................................................................................................................................................................................227....................................................................................................................................................................................410................................................................................................................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR037901(GSM510437) testes_rep2. (testes) | mjTestesWT1() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................................................................TGACAAACGCAGGGCAAATTGAGAAC........................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 4.00 | 4.00 | - | 1.00 | - | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................................................TCGACTCTGAGCTTTCGAGCTATAGCTG...................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................CTGTGTGCGAGACTGGTGACTGGGA......................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................................................................................................................................................................................GACTCTGAGCTTTCGAGCTATAGCTGGC.................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................TATTCACGTGCCACCGTCCAACATACC................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGGCAGTGAATTTGGCCATCAGGA................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................TGACTGTGTGCGAGACTGGTGACTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................CTAGGGTAGAGTTCTGTGGTCAATGACAC........................................................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................TAATGACTGTGTGCGAGACTGGTG................................................................................................................................................................................................................................................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................TGTGACCCCTGATGGATAATGACTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...........................................................................................................................................................CCTGATGGATAATGACTGTGTGCGAGACTGG.................................................................................................................................................................................................................................................................................................................................................................................................................. | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................TGACAAACGCAGGGCAAATTGAGAACACC........................................................................................................................................................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ......................................................................................................................................................................................CTGGTGACTGGGAtaat..................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | taat | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................TGGATAATGACTGTGTGCGAGACTGGT................................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGAGGGCTGGAAGGcaga................................................................................................... | 20 | caga | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .....................................................................................................................................................................AATGACTGTGTGCGAGACTGGTGACTG............................................................................................................................................................................................................................................................................................................................................................................................................ | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TGGTGACTGGGAGTTGGGTATAAGACCT......................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTTTCGAGCTATAGCTGGCA................................................................................................................................................................................... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................ATAATGACTGTGTGCGAGACTGGTGACTGGG.......................................................................................................................................................................................................................................................................................................................................................................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..................................................GTGAGAGACTGGGGTTtt........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 18 | tt | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ...................................................TGAGAGACTGGGGTTGTGTGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | 23 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................TGGATAATGACTGTGTGCGAGACTGGTG................................................................................................................................................................................................................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................TAATGACTGTGTGCGAGACTGGTGACT............................................................................................................................................................................................................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTGGCAGTGAATTTGGCCATCAGG................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................GACTGTGTGCGAGACTGGTGACTGG........................................................................................................................................................................................................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................TGAGAGACTGGGGTgca........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ | 17 | gca | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................................................................................................TATTCACGTGCCACCGTCCAACATACCC.................................................................................................................................................................................................................. | 28 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................GCTTGTGGCTGCTGTGAGAGACTGGGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................GGTGACTGGGAGTTGGGTATAAGACCTA........................................................................................................................................................................................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................TGGTGACTGGGAGTTGGGTATAAGACC.......................................................................................................................................................................................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................................................................................................ACTAGGGTAGAGTTCTGTGGTa................................................................................................................................................................................................................................................................... | 22 | a | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................AGACTGGTGACTGGGAGTTGGGTATA............................................................................................................................................................................................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCTGTAATTGCGAATTTTCTCTGC......................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................TAATGACTGTGTGCGAGACTGGTGAC.............................................................................................................................................................................................................................................................................................................................................................................................................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................CAACATACCCTCGACTCTGAGCTTTCGA................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| CATCCCGTGAGCAGGCCCTCCCTGGTGGCCAGAGGCGGCTTGTGGCTGCTGTGAGAGACTGGGGTTGTGTGTGTGTCTGGTCTTTGTGTGAGGCAGGCAGAGCAGCCAGCAAGGATCTGGGAGCAGAGTTGTGTGCCATCTGCCTGTGTGTGACCCCTGATGGATAATGACTGTGTGCGAGACTGGTGACTGGGAGTTGGGTATAAGACCTAAACTGGGGCACCTGCAGCCTGACAAACGCAGGGCAAATTGAGAACACCACAGGTATTCATCCCGTAGGAAGGCCCCTTATTTGACCATGACAGGCACTAGGGTAGAGTTCTGTGGTCAATGACACTAAAACAAAATAATATTCACGTGCCACCGTCCAACATACCCTCGACTCTGAGCTTTCGAGCTATAGCTGGCAGTGAATTTGGCCATCAGGAAGCACACGCAAGGGCCAGAGTATGCCGGTTACCCAGCCTGCAGGGAGGGCTGGAAGGGCTGGGAGGGCACATGGGTACATCTGTAATTGCGAATTTTCTCTGCCTCTCAGCCCGCAGGCTGGCCAGGCACAGGTGAGCTCAGATATCCTGTTCCCTCGGG ....................................................................................................................................................................................................................................(((.......((.((((....(((.((..((((((((.((((..(((.(((....(((..((((......))))..))).))))))..))))))))))))...((.(((....................))).))...)))))....))))))...(((((((....)))).)))..))).................................................................................................................................................................................... ..................................................................................................................................................................................................................................227....................................................................................................................................................................................410................................................................................................................................................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR034121(GSM466731) Mili IP_Tdrd9-/- replicate2. (mili testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | mjTestesKO8() Testes Data. (Zcchc11 testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR029043(GSM433295) 18.5dpc_homo_tdrd1-KO. (tdrd1 testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509280(GSM509280) small RNA cloning by length. (testes) | SRR028732(GSM400969) Mili-Tdrd1 KO associated. (mili testes) | SRR029042(GSM433294) 18.5dpc_hetero_tdrd1-KO. (tdrd1 testes) | SRR037901(GSM510437) testes_rep2. (testes) | mjTestesWT1() Testes Data. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................................................................................................................................................................................................GCCACCGTCCAACATACCCTCGACTCTG......................................................................................................................................................................................................... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGTATGCCGGTcgac................................................................................................................................... | 18 | cgac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGATATCCgaa............ | 15 | gaa | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................ACCTGCAGCCTGACAAAct.............................................................................................................................................................................................................................................................................................................................................................. | 19 | ct | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...............................................................................................................................................................................................................................CTGCAGCCTGACAAAC............................................................................................................................................................................................................................................................................................................................................................. | 16 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - |