| Gene: Rab3gap1 | ID: uc007clc.1_intron_7_0_chr1_129806528_f.5p | SPECIES: mm9 |
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(1) OTHER.mut |
(2) PIWI.mut |
(8) TESTES |
| ATACGTGCTTCAGGATTGGCAGCAATACTTTTGGCCTCAGCAGCCTCCAGGTGAGAACATTTGGAACTGTGTTTAACCTATTAAAATAGATTGAAAAGAAAATATATTAAGAAATTAAGATTATCTAATGGTGTTTCATACTAGGAATTCCTGTATTCTTTTAAATGTAATTGCTGATTTTGTTATCTGTATAATTTTATTTTCCTGAAGAAAGCTCTCACATCTTTTTGAGACAGTGCTATTTCATATT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................ATACTAGGAATTCCTGTATTCTTTTAAATGTAATTGCTGATTTTGTTATCTG............................................................. | 52 | 1 | 35.00 | 35.00 | 35.00 | - | - | - | - | - | - | - |
| ...........AGGATTGGCAGCAATACT............................................................................................................................................................................................................................. | 18 | 1 | 2.00 | 2.00 | - | 2.00 | - | - | - | - | - | - |
| ........TTCAGGATTGGCAGCAATACTTTTGGC....................................................................................................................................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - |
| ...........AGGATTGGCAGCAATACTTTT.......................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - |
| .....TGCTTCAGGATTGGCAGCAATA............................................................................................................................................................................................................................... | 22 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - |
| ..ACGTGCTTCAGGATTGGCAGCAAT................................................................................................................................................................................................................................ | 24 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - |
| .TACGTGCTTCAGGATTGGCAGCAATA............................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - |
| ATACGTGCTTCAGGATTGGCAGCAATACTTTTGGCCTCAGCAGCCTCCAGGTGAGAACATTTGGAACTGTGTTTAACCTATTAAAATAGATTGAAAAGAAAATATATTAAGAAATTAAGATTATCTAATGGTGTTTCATACTAGGAATTCCTGTATTCTTTTAAATGTAATTGCTGATTTTGTTATCTGTATAATTTTATTTTCCTGAAGAAAGCTCTCACATCTTTTTGAGACAGTGCTATTTCATATT |
Size | Perfect hit | Total Norm | Perfect Norm | SRR363963(GSM822765) AdultGlobal 5'-RACEread_length: 105. (testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | SRR069809(GSM610965) small RNA sequencing; sample 1. (testes) | SRR014230(GSM319954) 10 dpp Dnmt3L-KO MILI. (mili testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | GSM509277(GSM509277) small RNA cloning by length. (piwi testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................................................CCTGAAGAAAGCTCTCAgggc.............................. | 21 | gggc | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - |
| .................................GCCTCAGCAGCCTCCA......................................................................................................................................................................................................... | 16 | 11 | 0.09 | 0.09 | - | - | - | - | - | - | - | 0.09 |