| Gene: Rab3gap1 | ID: uc007clc.1_intron_2_0_chr1_129770733_f.5p | SPECIES: mm9 |
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(2) OTHER.mut |
(3) PIWI.ip |
(14) TESTES |
| TGAATGACTGGAAACTGATTGGACCCTCTCTGGGAAAGCCACTGGAAAAGGTCAGATCTGTTCACTTGTATCTCTAGATTGCTATTTACTTTGAAATCTTTGTTTTTATGCCCCTTGCTACAAATAATGCATTTGCATTAAAATGTTGAAATTTTAAGTTGTATAAAGTCTTATGAACATCAAATAGCATCTGGAAGAACTTGGGTTTGAATTTGTAGCAAATGATATATGTAAGATATTTGCAAAACTT ...................................................(((((((((((....(((.((...(((((..(((..((((.(((.((..((((((.((((....(((..........)))...)))).))))))..))..))).))))...))).)))))...)))))...))))).))))))........................................................ ..................................................51...................................................................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) |
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| ...........................................................................................................................................................................TATGAACATCAAATAGCATCTGGAAGAAC.................................................. | 29 | 1 | 5.00 | 5.00 | - | 2.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................TGAACATCAAATAGCATCTGGAAGAACTT................................................ | 29 | 1 | 4.00 | 4.00 | 1.00 | - | - | - | - | 2.00 | - | - | - | - | - | 1.00 | - | - |
| ........TGGAAACTGATTGGACCCTCTCTGGGAAAGC................................................................................................................................................................................................................... | 31 | 1 | 3.00 | 3.00 | - | - | - | - | 1.00 | - | - | - | 2.00 | - | - | - | - | - |
| .............................................................................................................................................................................TGAACATCAAATAGCATCTGGAAGAAC.................................................. | 27 | 1 | 3.00 | 3.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................TGAACATCAAATAGCATCTGGAAGAACT................................................. | 28 | 1 | 3.00 | 3.00 | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - |
| .........GGAAACTGATTGGACCCTCTCTGGGAAAGC................................................................................................................................................................................................................... | 30 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - |
| ......ACTGGAAACTGATTGGACCCTCTCTGG......................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - |
| ....TGACTGGAAACTGATTGGACCCTCTCT........................................................................................................................................................................................................................... | 27 | 1 | 2.00 | 2.00 | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................TGAATTTGTAGCAAATGATATATGTAA................ | 27 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - |
| ..................................................GTCAGATCTGTTCACTTGTATCTCTAG............................................................................................................................................................................. | 27 | 2 | 1.50 | 1.50 | 1.00 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................TGGGTTTGAATTTGTAGCAAATGATA....................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ............................TCTGGGAAAGCCACTGGAAAAGGacg.................................................................................................................................................................................................... | 26 | acg | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....GACTGGAAACTGATTagac.................................................................................................................................................................................................................................. | 19 | agac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| ...............TGATTGGACCCTCTCTGGGAAAGCCACT............................................................................................................................................................................................................... | 28 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .......................................................................................................TTTTATGCCCCTTGCTACAAATAATGCAT...................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ........................................................................................................................................................................................TAGCATCTGGAAGAACTTGGGTTTGAATT..................................... | 29 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TATGAACATCAAATAGCATCTGGcaga.................................................... | 27 | caga | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TATGAACATCAAATAGCATCTGGAAGAACTT................................................ | 31 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................TATTTACTTTGAAATCTTTGTTTTTATGC........................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................TATGAACATCAAATAGCATCTGGAAGAA................................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .GAATGACTGGAAACTGATTGGACC................................................................................................................................................................................................................................. | 24 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................TAGCATCTGGAAGAACTTGGGTTTGAAT...................................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................TGGAAGAACTTGGGTTTGAATTTGTAGC............................... | 28 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..AATGACTGGAAACTGATTGGACCCTCT............................................................................................................................................................................................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........GAAACTGATTGGACCCTCTCTGGGAA...................................................................................................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................TGAACATCAAATAGCATCTGGAAGAA................................................... | 26 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................TGGAAGAACTTGGGTTTGAATTTGTAGCAAA............................ | 31 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............TGATTGGACCCTCTCTGGGAAAGCCACTG.............................................................................................................................................................................................................. | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................TTATGAACATCAAATAGCATCTGGAAGAAC.................................................. | 30 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................TGGAAGAACTTGGGTTTGAATTTGTAG................................ | 27 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..........................TCTCTGGGAAAGCCACTGGAAAAGGac..................................................................................................................................................................................................... | 27 | ac | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| .....................................................................................TTACTTTGAAATCTTTGTTTTTATGCCCC........................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ..........GAAACTGATTGGACCCTCTCTGGGAAAGC................................................................................................................................................................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................GTCAGATCTGTTCACTTGTATCTCTAGAT........................................................................................................................................................................... | 29 | 2 | 0.50 | 0.50 | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - |
| TGAATGACTGGAAACTGATTGGACCCTCTCTGGGAAAGCCACTGGAAAAGGTCAGATCTGTTCACTTGTATCTCTAGATTGCTATTTACTTTGAAATCTTTGTTTTTATGCCCCTTGCTACAAATAATGCATTTGCATTAAAATGTTGAAATTTTAAGTTGTATAAAGTCTTATGAACATCAAATAGCATCTGGAAGAACTTGGGTTTGAATTTGTAGCAAATGATATATGTAAGATATTTGCAAAACTT ...................................................(((((((((((....(((.((...(((((..(((..((((.(((.((..((((((.((((....(((..........)))...)))).))))))..))..))).))))...))).)))))...)))))...))))).))))))........................................................ ..................................................51...................................................................................................................................................200................................................ |
Size | Perfect hit | Total Norm | Perfect Norm | SRR248523(GSM733811) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248524(GSM733812) cell type: Thy1+ spermatogonial stem cellstra. (testes) | SRR248526(GSM733814) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248525(GSM733813) cell type: Thy1- spermatogonial stem cellstra. (testes) | SRR248527(GSM733815) cell type: spermatogonial stem cell enriched . (testes) | SRR034119(GSM466729) Mili IP_Tdrd9+/- replicate2. (mili testes) | SRR014233(GSM319957) 16.5 dpc MIWI2. (miwi2 testes) | mjTestesKO6() Testes Data. (Zcchc11 testes) | mjTestesWT3() Testes Data. (testes) | mjTestesKO7() Testes Data. (Zcchc11 testes) | SRR014236(GSM319960) 10 dpp total. (testes) | SRR034118(GSM466728) Mili IP_Tdrd9+/- replicate1. (mili testes) | SRR014235(GSM319959) 2 dpp total. (testes) | SRR069811(GSM610967) small RNA sequencing; sample 3. (testes) |
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